Bacillus sp. Y1: DOE78_15205
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Entry
DOE78_15205 CDS
T05922
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bacq
Bacillus sp. Y1
Pathway
bacq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bacq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DOE78_15205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacq03400
]
DOE78_15205
Enzymes [BR:
bacq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DOE78_15205
DNA repair and recombination proteins [BR:
bacq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DOE78_15205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AYA76682
UniProt:
A0A385NS21
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Position
3112416..3114245
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AA seq
609 aa
AA seq
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MKPMLPTLTFEVPQGDNWNYEVKYDGFRALLFWDKEIKLISRNGNSLLEIFPEIKLYLEK
NNELFKEFLPLVLDGELVYLENEYKAHFSSIQVRGRMRSEKKILEKALHNPCRLLVFDLL
SLNGKSYSDRNYVDRKKALLKLFEDCHLPTAPDPVSSDLIQLIPASKDYQAVWEQVVLHD
GEGIVAKQDTNQWEEGKRTTLWLKFKNFKYVSCFVTAYEKSNGYFYVGVYKDTNIYPIGQ
FLFGIKPEEKQALFQIIKENKTKEDDRFIYVQPAICLEIKYLELYDEQMREPHFERFQFD
LSPEDCTFEKFVHQQKNLPKDIDVTHPDKPLWEKPAVKKIDFIRYLQEISPYLLPFLHNR
LLTVIRYPHGMFGEAFYQKNCPDYAPEFVQTALHDGINYIVCNNLKTLLWLGNQLAFEFH
IPFQTLSSHGPSEIVLDLDPPSKKEFKLAIKAAQMIKEVLDHLNLIGFVKTSGNKGLQIY
IPLPENEFSYDDTRLFTEFIAEYLISKAPNSFTIERLKKNRQNKLYIDYIQHAEGKTIVA
PYSARGNDTAALATPLFWDEVTDELRMEDFTILNMMKRINEKGDPFQSYFETKQKQNFSP
ILEFLKQKK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccaatgctacctactttaacattcgaggtaccacagggtgataattggaactac
gaagtaaaatacgatggctttcgtgcgcttttattttgggataaggaaataaaattgata
agcagaaacggaaactccttacttgaaatttttccagaaattaaactttacctagaaaaa
aacaatgaattgtttaaagaatttctacccttggtgctcgacggggagttagtgtatctt
gaaaatgaatataaagcgcattttagcagcattcaagttcgaggcagaatgcgcagcgaa
aagaaaatacttgaaaaagcattgcataatccatgccgtctccttgtatttgacttatta
tcattaaacggaaaatcttacagtgataggaattatgttgatcgtaaaaaagcacttctt
aagctttttgaagactgtcacttacccacagctcccgaccccgtgagttcagatttaatt
cagctaattcccgcttctaaagattatcaagccgtttgggaacaagtcgttttacatgat
ggtgaaggaattgtggccaagcaagatacaaatcagtgggaggaaggcaaacgaaccact
ctttggttgaagttcaaaaactttaagtatgtttcctgctttgtcacagcatatgaaaag
tcaaatgggtatttttatgttggagtttacaaggataccaatatatatccaattggacaa
tttttatttggtattaaacccgaggaaaaacaagctctttttcaaattattaaagaaaat
aaaacaaaagaggatgaccgtttcatctacgttcaacccgctatctgcttagagattaag
tatttagaactttatgatgaacaaatgcgcgagcctcattttgaacggtttcaatttgat
ctttcacctgaggattgtacgtttgaaaaatttgttcatcagcaaaaaaatttacctaag
gatattgatgttacacatccagataagcccttatgggagaagccagcggtaaagaagatt
gattttattcgttatttacaggaaatttcaccgtatttattgccatttttacataaccga
ttattaaccgttattcgttatccacatggtatgttcggtgaagctttttatcaaaaaaac
tgtcctgactatgcacctgagttcgttcaaaccgccttacacgatggtatcaattatatc
gtttgcaataatttaaaaacgttattatggttaggtaaccagctggcatttgagttccat
attccttttcaaactctatctagtcacggaccaagtgaaattgtgttagatttggatcct
ccttctaaaaaggaatttaaactagctattaaagctgctcaaatgataaaagaagttctc
gaccatttgaatcttattggttttgtaaaaacgtcaggaaataaaggtctacagatatat
atccctcttcctgaaaatgaattttcttacgatgatacaagactgtttacggaattcatt
gcagaatatttaatctcgaaagcaccaaattcttttactatcgaacgcttaaagaaaaat
cggcaaaataaattgtatatcgactatatccaacatgcagaaggaaaaaccattgtggca
ccttattctgcaaggggaaatgatacagccgctctagccactcccttattttgggatgaa
gtaacagacgaacttcgtatggaggattttacgatcttaaacatgatgaagcgtataaat
gaaaaaggcgacccgtttcaatcctatttcgagacgaaacaaaagcagaacttttcaccc
attcttgaatttttaaaacaaaaaaaatag
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