Bifidobacterium actinocoloniiforme: AB656_01415
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Entry
AB656_01415 CDS
T04036
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bact
Bifidobacterium actinocoloniiforme
Pathway
bact03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB656_01415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bact03400
]
AB656_01415
Enzymes [BR:
bact01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB656_01415
DNA repair and recombination proteins [BR:
bact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB656_01415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
AroM
RecG_dom3_C
BAT
Motif
Other DBs
NCBI-ProteinID:
AKV55132
UniProt:
A0A086Z013
LinkDB
All DBs
Position
362279..365842
Genome browser
AA seq
1187 aa
AA seq
DB search
MADDRSQRLDGSLAPLLEVLRADPAFDHLAGGRIETGEERPDGSIVLQAPSGIRPALAAA
AAGSSTVIVVVPSGRDAEEMASALRSWYPGDARDIALLQAWETLPHERLSPRADTVAGRM
AVFRRLAHPQEDDELFGHIRILVMPVRSLIQPVVQGLGEVEPLVFRTERDLPLDEAASRL
QRAAYTRADLVMNRGEYAVRGGILDVFVPTAAHPARIEYFGDTVDSIHSFHASDQRTYGD
DLGQVWATPCRELELTDQVRQRAASLKGRIPNADDMLESIAEGIPVEGMESLLPALVDQL
ATVESLLPRRAVVFLSDPELLRRSAQDLAKTANEFLAASWHVAASGHGAGAPICFDQASF
IDYDEAVASLGSGARQLIALTDFNADSVVGEGESLSAQAPQEFRGDEDKARSGIEGLLKT
GDRVVVTAAGQGTLSRLKRAVEATGAAGVDYVRSLATDGFVDGAAHLALLTERDLTGRSS
VVAPPKSAKRRGKAIDLTELKPGDYVVHEAHGIGRFLGMRQRQVGLKASKGTREYLVLEY
APSKRGGPADKLFVPADQLDQVSKYIGSEAPKLNKLGGSDWAQTKAKAKKHVHEIADDLV
KLYSARQRTHGFAFSPDTPWQKELEDAFPYQETPDQLTAIDEVKRDMERPVPMDRLICGD
VGFGKTEIAIRAAFKAVQDAKQVVVLVPTTLLVQQHYQTFTERFEGFPVTVAQMSRFQSP
KENKEAMAGLADGTVDVVIGTHKLLNPKIRFKDLGLMIIDEEQRFGVEDKETLKAIRTNV
DVLSLSATPIPRTLEMAVTGIREMSTLVTPPEDRLPVLTYVGAYEDAQVTAAIRRELLRG
GQVFYVHNRVEDIAKVSAKVHELVPEARVAVAHGKMGEKQLDAVIRDFWRRDVDVLVCTT
IVETGLDIPNANTLLVDRADRFGLSQLHQLRGRVGRGRERAYAYFLYDPAKPMTQAAHDR
LTTIAQNTALGSGYDVAMKDLELRGTGNLLGSEQSGHIEGVGFDLYVRMVSQAVDEYKEP
ERAEPVSVSIDLPLEASIPTDYIDSDKLRLEAYRKLASAQDEQDLQDLYEELSDRYGPPP
TEFETLFAVARLRSKARALGISEINGQSSRVRVSKLDMPESLQMRISRLYKGSRYHAVTH
VLQVPAPFAGGLGAKPMDSEQILEWTDRLLDDLAYKHEPKTQASEAL
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatcgctcccagcggttggatggctccctggcccccctattggaggtcttg
cgtgccgaccccgcattcgaccatctggctggcggccggattgaaaccggagaggagcgc
cccgatgggagcatcgtcctccaggcgccgtcggggattcgtccagccctggcggctgcg
gcagcggggtcttccaccgtcatcgtcgtcgtgccttccggccgagacgctgaagaaatg
gcatccgccctgcgctcctggtacccgggtgacgctcgtgatatcgcgctcctgcaggct
tgggagaccttgccccacgaaaggctctcccctcgggccgatacggtggccggccgcatg
gccgtcttccgccgcctggcccacccccaggaggatgacgagcttttcggccatatccgc
atcctagtcatgccagtgcgctccctgatccaaccggtggttcagggcctgggcgaggtg
gaacccctggtcttccgaacggagcgtgatttgcccctggatgaagccgccagccgtctc
cagcgcgccgcctacacgcgggcggacctggtcatgaaccgcggcgagtacgcggtgcgc
ggcggcatccttgacgttttcgtccccaccgccgctcatccggcgcgcatcgagtacttt
ggcgatacggtcgattcaattcattccttccacgcctccgaccagcgcacctacggggac
gacctggggcaggtctgggccaccccctgccgggagctggagttgaccgaccaagtccgt
cagcgcgccgcgtccctcaaggggcgcatccccaacgcggacgacatgctggaatccatc
gccgagggcatcccggtggagggtatggaatccctgctgccggccctggtggaccagctg
gccacggtcgaatcactcctgccacgccgggccgtcgttttcctgtccgaccctgagctc
ctgcgccgatcggcccaagacctggctaagaccgccaacgagttcctggccgcctcctgg
cacgtggccgcctccggccatggcgccggcgctccgatctgcttcgaccaggcttccttc
atcgactacgacgaggcggtcgcttccttgggctctggtgcgcggcagctcatcgccctc
accgacttcaacgccgactcggtcgtgggtgagggcgaatccctgtccgcgcaggcgccg
caggagttccgcggtgatgaggacaaggctcgttcaggcatcgagggcctgttgaagacc
ggcgatcgtgtggtggtcaccgccgccgggcaagggaccttgagccgcctgaagcgggcg
gtcgaggcgaccggtgccgccggcgtggactatgtgcgctcccttgccacggacggtttc
gtcgatggcgcagcccacctggccctgctgaccgagcgggatttgaccggtcgttcctcg
gtggtcgcgccccctaagtcagccaagcgtcgaggcaaggccattgacttgaccgagctc
aagcccggcgactatgtggtccatgaagcccacggcatcggtcgcttcctgggtatgcgc
cagcggcaggtagggctcaaagcaagcaagggcacccgcgagtacctggtcctggagtac
gcgccatccaagcgcggcggccctgctgacaagcttttcgtgccagccgaccagctggac
caggtcagcaagtatataggctcggaggcccccaagctcaacaagctcggcggttcggac
tgggcgcagaccaaggccaaggccaagaagcatgtccacgagatcgccgatgacctggtc
aagctctattcggcccgccagcggacccatggttttgccttcagtccagacaccccctgg
cagaaggagctggaggacgccttcccctaccaggagaccccggaccagctgaccgccatc
gatgaggtcaagcgggacatggagcggccagtgcctatggaccggctgatttgcggggat
gtaggcttcggtaagaccgagatcgcgatacgggccgcgttcaaagccgttcaggacgcc
aagcaggtggttgtgctggtgcccaccactctgctggtccagcagcactatcagaccttc
accgagcgcttcgagggcttcccggtcaccgtggcgcagatgagccgcttccagagcccg
aaagagaacaaggaggctatggcgggcctggctgacggcactgtggacgtggtgatcggc
acccacaagctcctgaatccgaagatccgcttcaaggaccttgggctgatgatcatcgac
gaggagcagcgtttcggcgtcgaagacaaggagaccttgaaggccatccgcacgaacgtg
gacgtgctctcactgtcagccacgccgattcccaggactttggaaatggcggtgaccggc
atccgggagatgtccaccctggtcacaccgcccgaggaccgtctgccggtcctgacctac
gtgggcgcctacgaggacgcgcaggtgacggccgcgatccggcgcgaactcctacgcgga
ggccaggtcttctacgtccataaccgtgtggaggacatcgcgaaggtctcggccaaggtc
catgagttagtgcccgaggcccgggtggccgtggcccacggcaaaatgggggagaagcag
ctggacgcggtcatccgggacttctggcgccgggacgtggacgtgctggtatgcacgacg
atcgttgagaccggtctggacatccctaatgcgaacacgcttctggtggaccgggcggac
cgtttcggcttgagtcagctccaccagctgcgcgggcgcgtggggcgcgggcgggagcgc
gcttacgcctacttcctgtatgatccggccaagccgatgacacaggccgctcacgaccgc
ctgaccacgatcgctcagaacacggccctgggatcgggctacgacgtggccatgaaggac
ctggagctgcgcggcacgggcaacctgctgggttcagagcagtccggccacatcgagggc
gtgggcttcgacctgtatgtgcgcatggtctcccaggccgtcgatgagtataaggagcct
gaacgtgcagaaccggtctcggtctcgatcgatctgccgctggaggcttcgatacccact
gactacatcgactcggacaaactgcggctggaggcataccgtaagctggcttccgcccag
gacgagcaggatttgcaagacctgtatgaggagttgagcgaccgttacggccccccgccc
accgagttcgagaccctgttcgcggtggcccgcttgcgctccaaggcccgggccctgggc
atcagtgagatcaacggtcagtcctcgcgtgtgcgcgtcagcaagcttgacatgcccgaa
tcccttcagatgcgcatctcccgtctctacaagggctcgcgctaccatgcggtcacacat
gtcctccaagtacccgctccgttcgctggcggcctgggcgctaaacccatggattcggag
cagatcttggagtggaccgaccgcctcctcgatgacttggcctataagcatgagcctaaa
acgcaagcgtcagaagcattgtga
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