Balaenoptera acutorostrata scammoni (minke whale): 103006526
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Entry
103006526 CDS
T03086
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03030
DNA replication
bacu03410
Base excision repair
bacu03420
Nucleotide excision repair
bacu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103006526 (LIG1)
03410 Base excision repair
103006526 (LIG1)
03420 Nucleotide excision repair
103006526 (LIG1)
03430 Mismatch repair
103006526 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacu03032
]
103006526 (LIG1)
03400 DNA repair and recombination proteins [BR:
bacu03400
]
103006526 (LIG1)
Enzymes [BR:
bacu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103006526 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
103006526 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103006526 (LIG1)
DNA replication proteins [BR:
bacu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103006526 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103006526 (LIG1)
DNA repair and recombination proteins [BR:
bacu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103006526 (LIG1)
NER (nucleotide excision repair)
Other NER factors
103006526 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
103006526 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
103006526
NCBI-ProteinID:
XP_007168272
UniProt:
A0A383YZG1
LinkDB
All DBs
Position
Un
AA seq
918 aa
AA seq
DB search
MQRSIMSFFQPTKEGKVKKPEKELSNSTRETESPPKVALKERNRVEPEGDSPVKRPGRKA
ARVLGSEGEEEEEEAPKPPKSQKPAPDSPQVSPPSPGTPPESSPSHPSTSPTAVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGAKKKKEEEEEELETPTESLTEPEGGKKKEAEE
GDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPSKAPKTLSSFFSPRKPAI
KKEAKEEGPSALRKDETKGHLDPSSYNPAKNNYHPVEDACWKVGQRVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVAALSPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKAVAQ
ATGRQLEAVRAEAAEKGDVGLVAESSRSTQRLVLPPPALTAAGVLTKFRDIAQLAGSAST
AKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLREHCRLSPGVPL
KPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPD
IISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
AAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPAPRSYVRADGAVAPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVCVREDKKPEEATTSAQVACLYRKQ
SQIQNQHAEPDSDLEDFY
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtattatgtcatttttccagcccacgaaagagggcaaagtgaagaagcca
gagaaggagctatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggaacctgagggcgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagcgaaggggaggaggaggaggaggaagcccccaagccccccaaa
agccagaagcctgctccagattccccacaagtctcccctcccagtcctggcacaccgcct
gagagcagcccttcccaccccagcacctctcccacggctgtctccccatcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacgggggagccaagaagaagaaggaggaggaggaagaagaatta
gagacaccaacagaaagcctcacagagcctgaagggggcaagaagaaggaagcagaagaa
ggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagcccccaacagaa
agcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggccaggctaag
cctccctccaaagctcccaagacgctcagcagtttcttctctccccggaagccagcaatc
aaaaaagaagcgaaagaagagggacccagcgctctgagaaaggacgagaccaagggacac
ctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgaagatgcttgc
tggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgagaagatcgaa
gaggtttccgcgcggctccggatggtggagacactgagcaacctcctgcgctccgtggcg
gccctgtcacctgctgacctcctccccgtcctctacctcagcctcaaccgcctggggcca
ccccagcagggcctggagctcggcattggcgacggcatcctcctcaaggcggtggcccag
gccacaggccggcagctggaggcggtccgggccgaggcggccgagaagggcgacgtgggg
ctggtggccgagagcagccgcagcacccagaggctcgtgctgcccccgcccgccctcacc
gccgccggcgtcctcaccaagttccgggacatcgcgcagctggccggcagcgcttccaca
gccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactcagaagcacgg
ttcattgccagagccctgagtggacggctgcgcctcgggctggcagagcagtcggtgctg
gcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattccccccagctgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacatggctggaggagcaaggc
atgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtccccgtgttg
ctggagcacggtctggagcggctccgggagcactgcaggctgagcccaggggtccccctg
aaaccaatgttggcccacccaacccggggcgtcagcgaggtcctgaggcgctttgaggag
gcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttctggaa
ggcggagaggtgaagatcttcagcaggaatcaggaggacaataccggaaggtaccccgat
atcatcagccgcatccacaagattaaactcccgtcagtcacatccttcatcctggacgcg
gaagccgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccgacgccggcag
ctgctccgggagaacttcgtggagacggagggcgagtttgtctttgccacctctctggac
accaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagactcctgcgag
gggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaagaggtcacac
aactggctcaagctgaagaaggactacctcgacggcgtgggcgacaccctggacctcgtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtatgggggcttcctgctg
gccgcctacgacgaggagagcgaggagctgcaggccatctgcaagctcggaacgggcttc
agtgacgaggagctggaggagcatcaccagagcctgcaggcgctggtgctgcccgcccca
cgctcctatgtccgggccgacggcgccgtggcccccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgcgcagacctctccctctcgcccatctacccggctgcccggggc
ctggtggatagcgagaagggaatctccctccgcttccctcggtttgtctgcgtccgtgag
gacaagaagccagaggaggccaccaccagtgcccaggtggcctgtctgtaccggaagcaa
agtcagattcagaaccagcacgcagagccagactctgacctggaagatttctactag
DBGET
integrated database retrieval system
