Bacillus sp. WP8: QR42_08520
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Entry
QR42_08520 CDS
T03530
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bacw
Bacillus sp. WP8
Pathway
bacw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bacw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QR42_08520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacw03400
]
QR42_08520
Enzymes [BR:
bacw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QR42_08520
DNA repair and recombination proteins [BR:
bacw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QR42_08520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AIZ60306
UniProt:
A0A0B4S8F3
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Position
complement(1725364..1727196)
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AA seq
610 aa
AA seq
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MKPMRLTPAHDIPTGADWVYELKYDGFRAILVWEEDEIRLESRTGKQLNEQFPEVMDQCE
QLRDKFAPFLPLTLDGELVFLLSEQQSEFAKVQQRGRLKNKEAIQRQAERFPCHFIAFDL
LRCKGKPLVDLPLTERKNQLQQVFQDAKLPSSVQLEHPSLLQVIHSDLDSEYMKNLMTMY
LAEGLVAKKKTSKWHDNTRSKEWLKIKNWRYVSVIVTRFDKENGYFQGSIYQDSALIEVV
QFKHGFSKEEEQTLRTLFQTKGQFTGGSSYEIPPSIVASIACISFDGSALREPRFSSFLL
DADPSACTFQQMLKQLYPLPAVIHVTHPEKPIVPALQLNKADYLLYLRQVAPYLLPFLRE
RRLTLIRYPHGSGDEFFYQKSTPDYAPDFVLTDEVDDISYTVCNDPRTLLWLGNQLTMEF
HIPFETRDTDRPTEIVFDLDPPSVNEFHLAIEAAKRIKVLLDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEETRKFTAFICHFLCEQAPDLFTLERLKKNRGNRLYLDYIQHDAGKTII
APYSPRGNELGLVATPLEWDELYHDELHPTLFTMPAVIERLKEKGDPFRRMRHLVNDDAF
RQVLHQLAHM
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctatgcgattaacacctgcacatgatattcctaccggtgcagactgggtgtat
gaattaaaatatgatggctttcgggctattcttgtatgggaagaagacgagattcgttta
gaaagcaggaccggaaaacagctaaatgagcaatttcctgaagtgatggatcagtgcgaa
caattaagagacaaatttgctccctttttaccactgacacttgacggagaattggtcttt
ttactcagtgaacagcaaagtgagtttgcgaaggttcagcaaagaggccggctgaaaaac
aaagaagccatccaaagacaggctgaacgatttccatgtcatttcattgcgtttgatcta
ttaagatgtaaagggaaacctctcgttgatttaccgttgacggagagaaaaaatcagctt
cagcaagttttccaagacgcaaagctcccttcatcagttcagctggagcacccttccctt
ctgcaggtcattcattcagacctagactctgaatacatgaaaaacttgatgacaatgtat
ttagcagaagggttagtagcgaaaaaaaagacgagtaaatggcatgacaatactcgttca
aaagaatggctgaaaataaaaaactggcggtatgtatctgtcattgtaacccgttttgac
aaagaaaatggctatttccaaggctccatttatcaagattcggctctcatcgaggttgtc
caattcaagcatggattttctaaagaagaagaacaaacactgcgcacgctattccagaca
aagggccagtttacaggaggatcatcatatgaaatccctccttctatcgttgccagcatt
gcgtgtatatcctttgatggatcggcgttaagagagccgcgtttttcttcctttttactg
gatgcggatccatcagcatgtacatttcagcaaatgctcaaacagctgtatccactccct
gctgttatacatgtcactcaccctgagaaacccattgtcccggcccttcaactgaacaag
gcagattacttactttatttaagacaagtggctccctatcttttgccctttttacgtgaa
aggcgtcttactttaattcggtatccgcacggcagtggagacgaattcttttatcaaaag
tcaactcctgattatgcgccggattttgttttgacagatgaagttgatgatatttcttac
acggtctgtaatgatcctcgtacgcttctttggcttggcaaccagctgacgatggagttt
catatcccttttgaaacaagagataccgatcggccgacagaaatcgtctttgatctggac
ccgccatctgtaaatgaatttcatctagctatcgaagctgctaaacgaatcaaagtgctt
ttagacggactttttctcacagcctttattaaaacaagcggaggtaaagggcttcaggtc
tatattcctttaaagaaaaatgccttcacatacgaagaaacaagaaaattcaccgcgttt
atatgccattttttatgtgagcaagcaccggatctatttactctggaacgtcttaagaaa
aatcgcggcaatcgcttgtatttagactacattcagcatgatgctggaaaaacaattatc
gctccatattccccgagaggaaatgagcttggacttgttgcgacaccgcttgaatgggac
gaactctatcatgatgagcttcatcctactctttttacgatgccagctgtcatagagcgt
ttaaaggaaaaaggcgatccgttccgccgcatgaggcaccttgtgaatgatgatgctttt
agacaagtcttacatcagcttgcacacatgtga
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