Bifidobacterium adolescentis ATCC 15703: BAD_0952
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Entry
BAD_0952 CDS
T00437
Symbol
ligA
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bad
Bifidobacterium adolescentis ATCC 15703
Pathway
bad03030
DNA replication
bad03410
Base excision repair
bad03420
Nucleotide excision repair
bad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAD_0952 (ligA)
03410 Base excision repair
BAD_0952 (ligA)
03420 Nucleotide excision repair
BAD_0952 (ligA)
03430 Mismatch repair
BAD_0952 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bad03032
]
BAD_0952 (ligA)
03400 DNA repair and recombination proteins [BR:
bad03400
]
BAD_0952 (ligA)
Enzymes [BR:
bad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAD_0952 (ligA)
DNA replication proteins [BR:
bad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAD_0952 (ligA)
DNA repair and recombination proteins [BR:
bad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAD_0952 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAD_0952 (ligA)
MMR (mismatch excision repair)
DNA ligase
BAD_0952 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAD_0952 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAF39733
UniProt:
A1A200
LinkDB
All DBs
Position
complement(1179365..1182043)
Genome browser
AA seq
892 aa
AA seq
DB search
MTMTNRDDSEQLAWDFDAPESDGSSAAVVADEGLASLTPGSERWIAALQPTDADAMRLDK
VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLD
SPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPLPMT
CEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFVE
IRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIGS
LRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRGDIE
HALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPVA
VLKPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREGE
LRRFVMPTRCPSCGAELAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGDQ
SAIALTNPEEDRPDSIDTYAPNITEIVVKPGEEPEPYEPVAGLELPPMQTPVLSSEAGLF
SLTSADLKDVRVWREAPIIEIHETVGSNGKIKKVRKRVGGSGLWHQVPAFWTAPTAARKR
KEADIDETAEYPQYVVPDDAVVIREEIKVSRGGTSSVQPVYIRPAENTRKMLDEMDKARH
ADLWRVLVALSIRRLGPPTARTIASAFGTLDAIEHASVDELSQIDGIGSEIAESVVTWFT
AAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTVVVTGSLEGFSRDSAKEAIVL
RGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLDTGTVE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
gtgacaatgacgaatcgtgatgattccgaacagttggcatgggatttcgacgcgccggag
agcgacggtagttccgcggccgtcgtggccgatgaggggctggcttcgctgactccgggc
agcgaacgttggattgccgcgttgcagccgaccgatgccgacgccatgcgcctcgacaag
gttgatgtggcttcgatgagcgccgaagccgcggccaggctgtgggcgcgcgtggccgca
tgggtggaatcagaccagatcgcatactatatcgacgatgcccccgtctcatccgacgcg
gcatatgacgcaagattgcgctgcctgcaatcgcttgaggcgcagttcccatcacttgac
tcaccgcagtcaccgacccatcgcgtgggcggcacgttctccaacgacttcgcttccgta
cgtcatccatcgcgcatgatgagcctcgatgacgtgttctccatcgaggagctgcgcgaa
tggtacgacggcgtgctcaggggattggattggcccgaatcgaagccactgcccatgacc
tgcgaggtgaaaatcgacggtcttgcgctgaacctcatctaccgcaacggcgtgcttgaa
cagggtctgaccagaggcgatggcgtgaccggcgaggacatcactctcaacgtgcgcacc
atctccaccattccgcagaaccttgccggaccggaggaagacattcccgaattcgtggag
atccgcggcgaagtgttcatgcgatgggacgatttcaacaagctgaacgccgagaacgag
gacgccggtcgcgcgccattcgccaatccccgcaacgcggccgcaggtagcctgagacag
aaggatccgcgtatcaccgcaacccgtcgcctgagcttctacgcgcacggcatcggatcg
ctgcgttggggtgcggggcacgccggcaacggccatgatgtggtcaacgaccaatccgaa
gcctacgaattgtataagaaatggggtgtgcccgtctctccgcacaaccgtgaggtcacg
tcgttcaaggaaatcctcgacatgatcgactattacggcgaacaccgaggcgacatcgaa
cacgcgcttgacggcatcgtcgtgaaggtcgacgatttgggattgcagcgttcccttggc
gccacatcgcgtgcgccgcgctgggccatcgcctacaaatatccaccggaagaagtcaat
accgagctgcttgacatcactgtgcaggtggggcgcaccggacgtgtgactccggtggcg
gtgttgaaacccgtgtacgtggccggttccacagtatcccgtaccacgctgcacaacccc
tttgaagtggaacgcaaaggcgtgctcatcggcgacaccgtggtggtgcgcaaggcggga
gacgtgattcccgagctcgtcggtccggtgctggagcgacgcaagggacgcgagggcgag
ctccgccggttcgtgatgcccacgcgttgcccgagctgcggcgcggaactcgctcccgcc
aaagagggagacaaagatatacgctgcccgaacgtggaatcctgcccggcgcagctgacc
gagcggatcatcaatctggcgtcccgcaaggcgttcgatatcgaacatctgggcgaccaa
tcagccattgcgctgacgaatcccgaagaggacaggcccgattccatcgacacgtatgcg
ccgaacatcaccgaaatcgtggtgaaacccggtgaggagcctgaaccgtacgagccggtg
gcgggactggaactgccgcccatgcagacacctgtgctgtccagcgaggccgggctgttc
tcgttgacgtccgcagacctcaaggatgtgcgcgtctggcgcgaggctccaatcatcgaa
atccacgagaccgtcgggtcaaacggcaagatcaagaaagtgcgcaaacgtgtgggcgga
tccggattatggcatcaggtgcccgcattctggaccgcgcctaccgccgcccgcaaacgc
aaggaagccgacatcgacgagaccgcggaatatccgcaatacgtggtgccggatgacgcc
gtggtgatccgcgaggaaatcaaggtatcccgtggaggcacgtccagcgtgcagccggtg
tacattcgtccggcggaaaacacccgcaagatgctcgacgaaatggacaaagcccgccat
gccgacctgtggcgcgttctggtggccctgtccatccgcaggctcggaccgcccaccgca
cgcaccatcgccagcgcgttcggtacgttggatgccatcgaacatgccagcgtggacgaa
ttgtcccaaatcgacggtattggttcggaaattgcggaatccgtagtcacatggttcacc
gcggcccgtgagccgggcaattggcgcggtgccgtgcttgacgcatggaaggccgccggc
gtaggagtcggacaagcccaagccagcggactaccacagacattggcaggcaaaacggtc
gtggtcaccggctcgttggaaggattctcccgcgattccgccaaagaggccatcgttctg
cgcggaggcaaagccgcaggatctgtcagcaagaaaaccgattgggtcgtcgtaggcgag
aatgccggctcaaaagccgcaaaagccgaggaactgggcatccccatgctcaacgaagac
caattcaaacagctgctcgacacaggaacagttgaataa
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