Bifidobacterium adolescentis BBMN23: BBMN23_0707
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Entry
BBMN23_0707 CDS
T03774
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bado
Bifidobacterium adolescentis BBMN23
Pathway
bado03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bado00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBMN23_0707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bado03400
]
BBMN23_0707
Enzymes [BR:
bado01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBMN23_0707
DNA repair and recombination proteins [BR:
bado03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBMN23_0707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AJE05679
LinkDB
All DBs
Position
843104..846670
Genome browser
AA seq
1188 aa
AA seq
DB search
MAAEPTSPAQPPQLPTAGSLAGILDVLETDDDFRALIAGEIEEPESDIDPSITVGVPDGL
RPALAAGAAGKQPVVLVVASSREAEEAVESIRSWYDGDPNDVAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPEEGSTLFGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQGEELPL
DEASRKLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPVRIEFFGDEIDTIREFHAS
DQRTYGKDISTVWATPCRELQLTDQIRQRAKSLIGSIPNAEDMLESIANAIPVEGMESLL
PALVDDMEPVQGMLPKHALVMLSDPEKLRRAADDLAKTANEFLAASWHVAASGHGAGAPI
TFDQANFYDFEETISALVFSKHDVWKLTSFGVDATREGHIQLDATKPGEYRGDENKAASG
IEGLLDAGYAVTITAAAQGTLTRLKRAINETGIANFDCVRSRAIDGFVDDAAKIALLTER
DLTGRTSAAGQAKTPKRRRKAIDLMELKTGDYVVHEQHGIGRFVEMRQRTIGKGENQTTR
EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAETPKLNKLGGSDWAATKAKARKHVH
EIAEDLVKLYSARQRTKGYAFSKDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPIPM
DRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHFETFTERFEGFPVNVAA
MSRFQTTKEINETFKGLEDGSVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAI
RRELLRGGQVFYVHNRVQDISSVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPM
TQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEQYKEPERKESVAVTIDLPIEASIPVDYIDSDKLRLEAYQKLASARTEDDLDELRDELT
DRYGKPPVDFEALFDVARLRFKARKLGISEIIAQGRNVRVSKFEPRESVQMRMARIYKGI
QYRPLTKTYLVPAPFAGSLGSKPMSSDEVVGWTSQLLDDLDWKPTPRQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgaaccgacgtctccggcgcaaccaccgcaactgccgaccgcaggctcgctt
gccggcatcctcgacgtgctggaaaccgatgacgatttccgcgcgctcatcgccggggaa
atcgaagaaccggaatcagacatcgaccccagcatcaccgtcggtgtgccggacggccta
cgcccggcgctcgcagccggcgctgcgggcaaacagccggtcgtgctcgtcgtcgcctcc
agccgcgaagcggaggaagccgtggagtctatccgttcctggtatgacggagacccaaac
gatgtggcgcagcttgaagcatgggagacccttccccatgaacggctttcaccacgcgcg
gacactgtggcaagccgcatggcggtgttccgcaggctgaagcatcccgaagagggcagc
acgctgttcggccccatccgcattctggtcatgccggtgcgctccctcatccaaccggtg
gtcgcaggcttgggggacgtcgaaccactcgtgttctcccaaggcgaggaactgcctctt
gacgaagcatcccgcaaactggtggaaaacgcgtacacgcgcgtcgacttggtgatggac
cgtggcgaattcgccgtccgcggtggcatcatcgacgtttttccgcccactctgccgcat
ccggtgcgtatcgaattcttcggcgacgagatcgacaccatacgtgaattccacgcatcc
gaccagcgcacctacggtaaggatatttccaccgtatgggccacgccatgccgtgaactg
cagttgaccgaccagattcgccaacgtgcgaaatcgctgatcggctccattcccaacgcc
gaggacatgctcgaatccatcgccaacgccatcccggtggaaggcatggaatcgctgctg
cccgcgctggtcgacgatatggaaccggtgcagggcatgctgcccaagcatgcgctggtc
atgctgtccgacccggaaaaacttcgtcgcgccgccgacgatctggcgaaaaccgccaac
gaattccttgccgcaagctggcatgtcgccgcatccggacatggcgccggagcgccgatc
accttcgaccaggcgaatttctacgatttcgaggaaaccatctccgcactcgtcttctcc
aaacatgacgtgtggaaactcaccagcttcggcgtcgacgccacccgggaaggccacatc
caacttgatgccaccaaacccggtgaataccgcggtgacgaaaacaaagcggcctccggc
atcgaaggactgctcgacgccggctatgcggtgacgatcacggccgcggcccaaggcaca
ctcacccgactgaagcgtgcgatcaacgaaaccggcatcgcgaatttcgattgcgtccga
tcgcgcgccatcgacggtttcgtggacgacgccgcgaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacatccgccgcaggacaggcgaaaacgccgaaacgccgccgcaag
gccatcgacctgatggaactcaaaacgggcgattacgtcgtgcacgaacagcatggcatc
ggccggttcgtcgagatgcgccaacgtaccatcggcaaaggcgagaaccagaccacccgc
gaatacctggtcatcgaatacgctcccagcaaacgaggcgcgccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggcgccgaaacgccgaaactc
aacaagctgggcggttccgactgggccgccaccaaagccaaggcgcgcaagcatgtgcat
gagatcgccgaggatctggtcaagctctactcggcacgccagcgtacgaaaggctatgcc
ttcagcaaggacacgccgtggcagaaggagctggaggacgctttcccctatcaggagacg
gccgaccagctcaccaccatcgacgaggtcaagtcggatatggagaaacccattccgatg
gaccgtctgatctgcggcgatgtgggcttcggcaaaaccgaaatcgcggtgcgcgccgcg
ttcaaggcggtgcaggattccaagcaggtggccgtgctcgtgccgaccacactgctcgtg
caacagcatttcgagactttcaccgaacgtttcgaaggcttccccgtgaacgtggctgcc
atgagccgattccagaccaccaaggagattaacgagaccttcaaggggcttgaagacggt
tccgtggatgtggtcatcggcacgcacaagctgctcaatccgaagatcaagttcaaggat
ctgggactcgtcatcatcgacgaggaacagcgtttcggcgtcgagcacaaggagacgctc
aaggcgttgcgcaccaatgtggacgtgctgagcctgtcggcaacgcctatcccgcgcacg
ttggaaatggctgtcaccggtatccgcgaaatgtccacgctggccacgccgccggaggat
cgcctgccggtgctcacctacgtcggcgcttacgaggacgcgcaggtcaccgccgccatc
cggcgcgagctgttgcgtggtgggcaggtgttctacgtgcacaatcgtgtgcaggacatc
tcctccgtcgcggcgaaaatccacgagctcgtgcccgaatcgcatgtcggcatagcccac
ggcaagatgggggagaaacagcttgacggtgtgatccgcgacttctggcatcgcgacatc
gacgtgctggtatgcaccaccatcatcgaaaccggccttgatatctccaacgccaacacg
ctgatcgtcgaccatgccgaccgcttcggcttgagccaattgcatcagctgcgtggccgc
gtcggtcgtggacgtgagcgcgcgtatgcgtacttcctgtacgatccgaccaagccgatg
acccagcaatcgcatgacaggctcgccaccatcgcgcagaacaccgcgctcggctctggc
ttcgacgtagccatgaaggatctcgaattgcgcggcaccggcaatttgctgggcgatgag
cagagcggccatatcgaaggcgtcggcttcgacctgtacgtgcgtatggtgtccgaagcg
gtcgaacagtacaaggagccggaacgcaaggaatcggttgccgtcaccatcgacctgccg
atcgaggcgtccattcccgtcgactacatcgattcggacaaactgcgattggaagcgtac
cagaaactcgcctccgcacgcaccgaagacgatctcgacgagctgcgcgacgaactcacc
gaccgttacggcaagccgcccgtcgatttcgaggcgctgttcgacgtggcgcggttgcgg
ttcaaggcgcgtaagctcggcatttccgagatcatcgcgcaaggacgcaacgtgcgcgtg
tcgaagttcgagccgcgtgaatccgtgcagatgcgcatggccagaatctacaaaggcatc
cagtaccggccgttgaccaagacgtatctggtaccggctccattcgcaggctcgcttggt
tccaagccgatgagctcggacgaagtggtcggatggaccagtcaattgcttgacgatctg
gactggaaaccgacaccgcgtcaatga
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