Bifidobacterium adolescentis BBMN23: BBMN23_1091
Help
Entry
BBMN23_1091 CDS
T03774
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bado
Bifidobacterium adolescentis BBMN23
Pathway
bado03030
DNA replication
bado03410
Base excision repair
bado03420
Nucleotide excision repair
bado03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bado00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBMN23_1091
03410 Base excision repair
BBMN23_1091
03420 Nucleotide excision repair
BBMN23_1091
03430 Mismatch repair
BBMN23_1091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bado03032
]
BBMN23_1091
03400 DNA repair and recombination proteins [BR:
bado03400
]
BBMN23_1091
Enzymes [BR:
bado01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBMN23_1091
DNA replication proteins [BR:
bado03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBMN23_1091
DNA repair and recombination proteins [BR:
bado03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBMN23_1091
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBMN23_1091
MMR (mismatch excision repair)
DNA ligase
BBMN23_1091
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBMN23_1091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AJE06063
LinkDB
All DBs
Position
complement(1251122..1253794)
Genome browser
AA seq
890 aa
AA seq
DB search
MTNRDDSEQLAWDFDAPESDGSSAAVVADEGLASLTPGSERWIAALQPTDADAMRLDKVD
VASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLDSP
QSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPLPMTCE
VKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFVEIR
GEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIGSLR
WGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRGDIEHA
LDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPVAVL
KPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREGQIR
RFVMPTRCPSCGAELAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGDQSA
IALTNPEEDRPDSIDTYAPNITEIVVKPGEEPEPYEPVAGLELPPMQTPVLSSEAGLFSL
TSADLKDVRVWREAPIIEIHETVGSNGKIKKVRKRVGGSGLWHQVPAFWTAPTAARKRKE
ADIDETAEYPQYVVPDDAVVIREEIKVSRGGTSSVQPVYIRPAENTRKMLDEMDKARHAD
LWRVLVALSIRRLGPPTARTIASAFGTLDAIEHASVDELSQIDGIGPEIAESVVTWFTAA
REPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTVVVTGSLEGFSRDSAKEAIVLRG
GKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLDTGTVE
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatcgtgatgattccgaacagttggcatgggatttcgacgcgccggagagcgac
ggtagttccgcggccgtcgtggccgatgaggggctggcttcgctgactccgggcagcgaa
cgttggattgccgcgttgcagccgaccgatgccgacgccatgcgcctcgacaaggttgat
gtggcttcgatgagcgccgaagccgcggccaggctgtgggcgcgcgtggccgcatgggtg
gaatcagaccagatcgcatactatatcgacgatgcccccgtctcatccgacgcggcatat
gacgcaagattgcgctgcctgcaatcgcttgaggcgcagttcccatcacttgactcaccg
cagtcaccgacccatcgtgtgggcggcacgttctccaacgacttcgcttccgtacgtcat
ccatcgcgcatgatgagcctcgatgacgtgttctccatcgaggagctgcgcgaatggtac
gacggcgtgctcaggggattggattggcccgaatcgaagccactgcccatgacctgcgag
gtgaaaatcgacggtcttgcgctgaacctcatctaccgcaacggcgtgcttgaacagggt
ctgaccagaggcgatggcgtgaccggcgaggacatcactctcaacgtgcgcaccatctcc
accattccgcagaaccttgccggaccggaggaagacattcccgaattcgtggagatccgc
ggcgaagtgttcatgcgatgggacgatttcaacaagctgaacgccgagaacgaggacgcc
ggtcgcgcgccattcgccaatccccgcaacgcggccgcaggtagcctgagacagaaggat
ccgcgtatcaccgcaacccgtcgcctgagcttctacgcgcacggcatcggatcgctgcgt
tggggtgcggggcacgccggcaacggccatgatgtggtcaacgaccaatccgaagcctac
gaattgtataagaaatggggtgtgcccgtctctccgcacaaccgtgaggtcacgtcgttc
aaggaaatcctcgacatgatcgactattacggcgaacaccgaggcgacatcgaacacgcg
cttgacggcatcgtcgtgaaggtcgacgatttgggattgcagcgttcccttggtgccaca
tcgcgtgcgccgcgctgggccatcgcctacaaatatccaccggaagaagtcaataccgag
ctgcttgacatcactgtgcaggtggggcgcaccggacgtgtgactccggtggcggtgttg
aaacccgtgtacgtggccggttccacagtatcccgtaccacgctgcacaacccctttgaa
gtggaacgcaaaggcgtgctcatcggcgacaccgtggtggtgcgcaaggcgggagacgtg
attcccgagctcgtcggtccggtgctggagcgacgcaagggacgtgagggccagatccgc
cggttcgtgatgcccacgcgttgcccgagctgcggcgcggaactcgctcccgccaaagag
ggagacaaagatatacgctgcccgaacgtggaatcctgcccggcgcagctgaccgagcgg
atcatcaatctggcgtcccgtaaggcgttcgatatcgaacatctgggcgaccaatcagcc
attgcgctgacgaatcccgaagaggacaggcccgattccatcgacacgtatgcgccgaac
atcaccgaaatcgtggtgaaacccggtgaggagcctgaaccgtacgagccggtggcagga
ctggaactgccgcccatgcagacacctgtgctgtccagcgaggccgggctgttctcgttg
acgtccgcagacctcaaggatgtgcgcgtctggcgcgaggccccaatcatcgaaatccac
gagaccgtcgggtcaaacggcaagatcaagaaagtgcgcaaacgtgtgggcggatccgga
ttatggcatcaggtgcccgcattctggaccgcgcctaccgccgcccgcaaacgcaaggaa
gccgacatcgacgagaccgcggaatatccgcaatacgtggtgccggatgacgccgtggtg
atccgcgaggaaatcaaggtatcccgtggaggcacgtccagcgtgcagccggtgtacatt
cgtccggcggaaaacacccgcaagatgctcgacgaaatggacaaagcccgccatgccgac
ctgtggcgcgttctggtggccctgtccatccgcaggctcggaccgcccaccgcacgcacc
atcgccagcgcgttcggtacgttggatgccatcgaacatgccagcgtggacgaattgtcc
caaatcgacggtattggtccggaaattgcggaatccgtagtcacatggttcaccgcggcc
cgtgagccgggcaattggcgcggtgccgtgcttgacgcatggaaggccgccggcgtagga
gtcggacaagcccaagccagcggactaccacagacattggcaggcaaaacggtcgtggtc
accggctcgttggaaggattctcccgcgattccgccaaagaggccatcgttctgcgcgga
ggcaaagccgcaggatccgtcagcaagaaaaccgattgggtcgtcgtaggcgagaatgcc
ggctcaaaagccgcaaaagccgaggaactgggcatccccatgctcaacgaagaccaattc
aaacagctgctcgacacaggaacagttgaataa
DBGET
integrated database retrieval system