Bacillus atrophaeus: BATR1942_04430
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Entry
BATR1942_04430 CDS
T01339
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bae
Bacillus atrophaeus
Pathway
bae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BATR1942_04430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bae03400
]
BATR1942_04430 (ligD)
Enzymes [BR:
bae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BATR1942_04430 (ligD)
DNA repair and recombination proteins [BR:
bae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BATR1942_04430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADP31840
UniProt:
A0A0H3DXW2
LinkDB
All DBs
Position
complement(865741..867564)
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AA seq
607 aa
AA seq
DB search
MQPVLTSSPPEGDEWRYEVKYDGFRCILHVTESGVTLTSRNGQLFNSTFPEITQYAENVF
QKMNKSLPLTIDGEIVFLMNPFRSDFEHVQVRGRMKNPEAIKKLADSRPCSFLAFDLLER
DGTDISSLPYTERKRELSELMRSAALPITVNHLAKETIQYIPDHAHFKPLWEQVQKYDGE
GIVAKKKGSKWIEKKRTPDWLKYKHFKKAYVCLTGFNPSNGYVTVSVFKNGGITPVASVS
HGMSDEEKNAIRSIMEAHGTKTPAGEYTLEPSICLTVQYLTILKGTLREVSFVSFEFDME
PAACTYEQMVRQSKTLHPKLEFTSLDKVIFEKKKRTKEDFITYIIEISDFLFPFLKDRAV
TVIRFPHGSKSESFFQKNKPDYTPDFVHSFFDGSHEHIVCEDISTLLWLANQLALEFHVP
FQTVSSRRPSEIVIDLDPPSKDDFLMSVHAANELKRLFDSFGISSFPKLSGNKGIQLYIP
LSPEAFSYEETRSFTMLIADYCTNAFPELFTTERFIKNRHGKLYLDYLQHAEGKTIICPY
STRGNELGTVAAPLYWNEVQTSLTPASFTIDTVVKRIKEQGCPFYDFYRNPQDEPLTAIL
QQLKKKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctgttctcacctcgtcaccgcctgaaggagacgaatggcgctatgaagtaaaa
tatgacggatttcggtgtattcttcatgtaacagagtcaggtgttacattaacgagcaga
aatgggcagctttttaacagcacgtttccggaaattacacaatacgcagaaaatgtgttt
caaaaaatgaataaaagccttccgttaacaattgacggagaaattgtatttttgatgaac
cccttccgctctgattttgaacacgttcaagtacgcggacggatgaaaaatccggaggcc
atcaaaaaattggcggacagccgcccttgcagctttctcgccttcgatcttttggaaagg
gacgggaccgatatatcgtctcttccatataccgagcgaaaaagagagctttccgagctg
atgagatccgctgcacttcccatcactgtcaatcatctggcaaaggaaaccattcaatac
attcctgaccacgcccattttaaaccgctttgggagcaagtgcaaaagtatgacggagaa
ggaattgtcgcgaagaaaaaaggaagcaaatggatagagaaaaaaaggactcctgattgg
cttaagtataaacattttaaaaaggcgtatgtttgtttaacaggatttaatccgagcaac
ggatatgtgacggtatctgtttttaaaaacgggggaataactcccgtcgcctctgtttca
cacggaatgagtgacgaagaaaaaaacgcaattcgatctattatggaggcgcacggcaca
aaaacgccggcaggcgaatatacgcttgaaccttcgatttgtttgactgttcaatattta
acgatattaaaaggcaccctgcgggaagtatcatttgtttcctttgaattcgatatggaa
cccgcggcatgcacttacgaacaaatggtgcgccagtcaaaaacattgcaccctaagctg
gaattcacaagtctcgataaagtcatttttgaaaaaaagaagcggacgaaagaggatttt
attacgtatatcattgaaatcagtgactttctgttcccttttctcaaagaccgggctgtg
actgttattcggtttccgcacgggtcaaagagtgaatctttctttcaaaaaaataagccg
gattacacgcctgattttgttcattccttttttgacggcagccatgaacatattgtttgt
gaggatatttccacattgttatggctcgccaatcagcttgccctagaattccacgttcct
tttcaaaccgtatccagccgccgcccgtcagaaattgtgattgatttagacccgccgtca
aaggatgattttctcatgtctgttcacgcggctaatgaactgaaacgattatttgactcg
ttcggcatctcatcgtttccgaagctttccggcaacaaaggcatccagctctatatccct
ttgtcacccgaagccttttcttatgaagaaacgcgcagtttcaccatgctgattgctgat
tactgcacgaacgcgtttcctgagttgttcacaaccgaacgcttcatcaaaaacagacat
ggaaaactgtatcttgattatttgcagcatgcggaagggaaaacaatcatctgtccttat
tccacccggggaaacgagctgggcacagtggcagcgcctctttattggaatgaagtgcaa
acatccctaacccccgcctcttttacgattgataccgtcgtcaagcgaatcaaggaacag
ggatgccccttttatgatttttaccggaatccgcaagatgagccgctgacagcgattttg
cagcagctgaagaaaaagagctga
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