Burkholderia aenigmatica: L3V59_11160
Help
Entry
L3V59_11160 CDS
T09543
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baen
Burkholderia aenigmatica
Pathway
baen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L3V59_11160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baen03400
]
L3V59_11160 (mfd)
Enzymes [BR:
baen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3V59_11160 (mfd)
DNA repair and recombination proteins [BR:
baen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L3V59_11160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UKD10263
LinkDB
All DBs
Position
1:2370290..2373760
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASTPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRGEVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDVLLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDERFALGVAPLANGFAVPGEGYAVVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKTMLEALVPEA
RIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGPKQGAAAPVR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccaccccgtccgcctcgcccgttgcccgcgtcaagcccggccag
cgtttcgccttcgacggcgcgcatggttccgccgatgcgctcgccatcgcccgttatctc
gccgacaaccgcggggaggtgccgctcctcgcggtgatctgcgcgaacgcggtcgatgct
caacggctctcgcaggaaatccgctacttctcgcccgacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacaccttctcgccacaccaggacctcgtgtccgagcgt
ctcgcgacgctgcacgatctcggcgaaggccgctgcgacgtcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcattcgcc
cagggcgagcggctcgacgaagcgaagctgaaggcgcagctcacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgatcaggtcgactcg
atccgcgcgttcgacccggacacgcagcgcagcctctacccggtgcgtgacgtccgcctc
ctgcccggccgcgagtttccgttcgacgaagccgcacgcacggcgttccgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaaccgccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgatctcgaggcatcgatc
cgccgcttcacggccgacacgaagcagcgccatgcgttcctcgcgcacgaccgcgagcgg
ccgatcctcgaaccgcagcggctgtttctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcccgcgtcgtactgcccgcgcagccggccggcggctgggcgaccgcgctgccc
gaactcaccgtcgatcgccacgccgacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtcgggcaagcgcgtgctgctgaccgtcgaatcggccggccgccgcgaaacgatcctg
cagttgctcgccgaacaccatctgcgccccgcgtcgaacgaccacttcgcgggctggctc
gagagcgacgaacgcttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcggtgccg
ggcgaaggctatgcggtcgtcaccgagaccgaactgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggccagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcaatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcaaagcgcaag
gccgcgcagcagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccacgcgttctcgctcgatccgcgcgactacgtgaagttcgccgaaagc
ttcggcttcgaggaaacgcccgaccaggccgccgccatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgctgcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcatacgcagaccttcgccgaccgcttcgcggactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtcaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaggcgctgaaggcgctgcgcgcggaagtggacgtgctgacgctcaccgcg
acgccgatcccgcgtacgctcgggatggcgctcgaagggctgcgcgatttctcggtcatc
gcaaccgcgccgcagaagcgcctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgattcgcgaggcgatgctgcgcgagctgaagcgtggtggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaagacgatgctcgaggcgctcgtgccggaagca
cgcatcgcgatcgcgcacggtcagatgcacgaacgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcatcgctcggacaagttcggcctcgcgcagctc
caccagttgcgcggccgcgtcggccgctcgcaccaccaggcgtatgcgtacctgctggtc
cacgatccgcaggcgctgaccaagcaggcccagcgccggctcgaagcgatccagcagatg
gaggaactcgggtcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaagtgctcggcgacaagcagtcgggcgaaatccacgagatcggcttccagctctatacg
gacatgctgaacgacgcggtaaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgacggaaatcaacctgcacgcaccggcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaggagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgatgcgagcgaggtcgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgttcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcggtcccaagcagggagcggctgccccggtgcgctga
DBGET
integrated database retrieval system
