Bacillus aerophilus: BAE_16205
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Entry
BAE_16205 CDS
T08735
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
baer
Bacillus aerophilus
Pathway
baer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAE_16205 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baer03400
]
BAE_16205 (ligD)
Enzymes [BR:
baer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BAE_16205 (ligD)
DNA repair and recombination proteins [BR:
baer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAE_16205 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QAR54271
LinkDB
All DBs
Position
complement(3153209..3155074)
Genome browser
AA seq
621 aa
AA seq
DB search
MKPMRLTSAHGIPVGADWLYELKYDGFRAILIWEKDAIHLESRAGKRLNKQFPEVIEQCQ
QLTKQLAPILPLTLDGELVFLLSEQESDFTKVQQRGRLKNTETIQRQAKRFPCHLIAFDL
LRCKGKSLVDLPLIERKAELHEVFQAANLPPSVQLNHPSLLQIIQTDSSPDDMKKIMLTY
LAEGLVAKKKMSKWQEHTRSKEWLKIKNWRYVSVIVTRFDKDNGYFQGCLYQETNLLEVV
QFKHGFSKEEEQTLRTLFLTKGQMTGASHYEIPPSIVAKIACISFDGSALREPRFSSFLF
AADPATCTFQHMLKQLYPLPALIDVTHPEKPVVPALHITKADYLLYLRQAAPYLLPFLRE
RRLTLIRFPHGTGGESFYQKATPDYAPDFVETDQAHDMSYTICNDPNTLLWLGNQLAMEF
HIPFETRDTDRPVEIVFDLDPPSVKEFHLAIEAAKRIKAILDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEQTRQFTAFICQFLCEQAPELFTLERLKKNRGNRLYLDYLQHDAGKTII
APYSPRGNELGLVATPIEWEELNSEDCHPSLFTMPAVMKRLKEKGDPFRKMRHHVNDDSF
RQVLYQLQDMLPAHKMDIRGH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgcgtttaacgtctgcacatggtattcctgttggagcagactggctgtat
gaattaaaatatgacggcttcagggccattcttatttgggaaaaagacgccatccattta
gagagcagagcgggaaaacgattaaacaaacaatttcctgaagtcattgagcagtgccag
caactaacaaagcagcttgcacctattttaccgctgaccctagatggagaattggtcttt
ttactgagtgaacaagaaagcgactttactaaagttcagcaaagaggccgcctgaaaaac
acagaaaccattcaacgccaggctaagcggtttccatgtcatttgattgcatttgatcta
ttgagatgcaaagggaaatccctcgttgatttaccgctgattgaaagaaaagctgagctg
catgaggtgttccaagctgcaaatcttcctccctccgttcagctgaatcacccctctctt
cttcaaatcatccaaaccgatagcagccctgatgacatgaaaaaaatcatgctgacctat
ttagcggaaggattagttgctaaaaagaaaatgagtaaatggcaggagcatacccgctcg
aaagaatggctcaaaatcaaaaattggcggtatgtatctgtcatcgtgactcgttttgat
aaagacaatggctattttcaaggatgtctttatcaagaaacgaatctcttagaggttgtc
caatttaagcatggtttttctaaagaagaagaacaaaccctgcgcaccttatttctaacc
aaaggtcaaatgactggagcatcacattatgaaatcccaccatccattgtcgcaaagatt
gcctgtatctcttttgatggatcagccttacgagagccccggttttcttcgtttttattc
gctgcagatccagcaacgtgtacctttcaacacatgctcaaacagctttatccgctccca
gctttgattgacgtcacccacccagagaaaccggttgtacctgcccttcatatcacaaag
gcagattacttactttatttgaggcaagccgctccctatttattgccctttttacgtgaa
agacgtcttacgttaatacgctttcctcatggcactggtggagaatctttttatcaaaag
gcaacgcccgattatgcgcctgattttgttgagacagatcaagcgcacgatatgtcttac
acaatctgtaatgatcctaatacgttgctttggcttggtaaccagctggcgatggaattt
catattccttttgaaacgagagatacagatcggcctgtagaaattgtatttgatttagat
ccgccttctgttaaagagtttcacctagcaatagaagcagccaaacgaatcaaggccatt
ttagatggactctttctcaccgcatttattaaaacaagtggtgggaaagggctacaagtt
tatatcccattgaagaaaaatgccttcacatatgaacaaactagacaattcactgcgttc
atctgccaatttttatgcgaacaagcacccgagctgtttacgctagagcgtctaaagaaa
aaccgcggcaaccgtttatatttagactaccttcaacatgatgctggaaaaacaatcatc
gccccgtattccccgagaggaaacgagctcggacttgttgcaacaccgattgaatgggaa
gaattaaatagcgaagactgtcacccttctttatttacgatgccggctgttatgaaacgt
ctaaaggaaaaaggcgatccattccggaaaatgaggcaccatgtgaatgatgattctttt
cgacaagttttatatcagctgcaggacatgttaccagctcataaaatggacatacgcggt
cattaa
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