KEGG   Bombus affinis (rusty patched bumble bee): 126915967
Entry
126915967         CDS       T09368                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
baff  Bombus affinis (rusty patched bumble bee)
Pathway
baff03030  DNA replication
baff03410  Base excision repair
baff03420  Nucleotide excision repair
baff03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:baff00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126915967
   03410 Base excision repair
    126915967
   03420 Nucleotide excision repair
    126915967
   03430 Mismatch repair
    126915967
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:baff03032]
    126915967
   03400 DNA repair and recombination proteins [BR:baff03400]
    126915967
Enzymes [BR:baff01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     126915967
    6.5.1.6  DNA ligase (ATP or NAD+)
     126915967
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     126915967
DNA replication proteins [BR:baff03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    126915967
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     126915967
DNA repair and recombination proteins [BR:baff03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     126915967
   NER (nucleotide excision repair)
    Other NER factors
     126915967
   MMR (mismatch excision repair)
    Other MMR factors
     126915967
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 126915967
NCBI-ProteinID: XP_050577211
LinkDB
Position
5:complement(13803863..13809025)
AA seq 953 aa
MYTRITFNLRSIVFNNIYSRSVIFLSKQFQLNAFFPIVNNVLNRILANSKIVKNGDQSNS
GNPKRKRDDSGDSSETVSSPIGNSSRKKSVSKSPSLLKKVNGTPKIKLSPTATTMEKEKK
KSKTPLTATKKKRKVNEVKSTPKKSDAKKKLKDLSSDEDQKENDLTVEKKTETSDEFESS
KSSPKESKTKKNVKNIEKKATKKRSRIIAPVDSSDEEEHNLLPESPKKANLDVEENNPIN
EEENSNEDVLDIQKDSEEEEKKKEDNIEKPTKKIHNFFAPKEKESTNNTDKDKKKSSSHS
YKPSASKYDPINDAFWKRGEKVPYIALTRTLELIEDTSARLKIIEILSNYFRSVIVLSPD
DLLPSIYLCLNQLAPAYEGIELGVAETNLMKAIAQCTGRTLAQIKADVQTVGDLGIVAEG
SRSNQRTMFRPAPLTVSNVYTRLKEIAQMTGSASLTKKLDKIQSLFVACRFTEARYLIRS
LAGKLRIGLAEQSVLQALALACTMTPPIQSYPPEVLDVSKKMSSDAFKQKYDETALTLKT
TYCECPNYDKIIPVLLKEGIEELPNKCKITPGIPMKPMLAHPTKGVQEVLTRFDGLKFTC
EWKYDGERAQIHLAEDGKINIYSRNQENNTSKYPDIIGRLKNTQGKEVKSCILDCEAVAW
DNENKQILPFQILSTRKRKDANEADIKVQVCVFMFDLLYLNGEPLVQQPFIKRRELLKKN
FKEVIGEWKFATSLDTSTMEQVQDFLDESVKGNCEGLMVKTLEQDATYEIAKRSRNWLKL
KKDYLEGVGDTLDVVVIGGYIGKGKRTGTYGGFLLACYDQENEEYQSVCKIGTGFSEEDL
QKHTEFFKEHIIPQTKSYYRYDSSLEPDHWFEPVQLWEIKCADLSLSPVHKAAVGIIDPE
KGISLRFPRFVRIRDDKNNEDATSAQQIANMYNSQEQIKNQTSSTKVAEEDFY
NT seq 2862 nt   +upstreamnt  +downstreamnt
atgtatactcgtattacgttcaatttgagatcaattgtattcaataatatttattcgcga
tctgtgatatttttaagtaaacaattccaattgaatgcttttttccctattgtaaataat
gttcttaatcggatactcgctaatagcaaaattgtaaagaatggagaccaaagcaattcg
ggaaaccctaaacgaaaaagagacgatagtggagatagcagtgaaactgtcagttcacct
attggaaattcctcaaggaagaaatcagtctcaaaatctccttcactactgaagaaagta
aatggaacaccaaaaattaagctatcaccaacagcaacaactatggaaaaagaaaaaaaa
aaaagcaaaactccacttactgctactaaaaagaaaagaaaagtcaatgaagtaaaaagt
acccctaagaagagcgatgcaaagaagaaattgaaagatctgtcaagtgatgaggatcag
aaagaaaatgatttaactgtagagaaaaaaacagaaacaagtgatgaatttgaatcttca
aagtcttcgcctaaggaatctaaaactaaaaaaaatgttaaaaatattgaaaagaaagct
actaaaaaaaggtcaagaataatagcacctgtcgattccagtgacgaagaagaacataat
ctattgccagagagtcccaaaaaagcaaatcttgatgtggaggaaaataacccaattaat
gaagaagaaaattctaatgaggatgttctagatattcaaaaggacagcgaagaagaagaa
aagaaaaaagaagacaatatagagaagcctacgaagaagatacataatttttttgctcca
aaagagaaagaaagtacaaacaatactgataaagataagaaaaagtcctccagtcactct
tataaacctagtgcctcgaaatatgacccaataaatgatgcattttggaaacggggagaa
aaggtaccatatattgcgttgacacgtaccttggaattgatcgaagatacaagcgctcga
ttaaaaataatagaaattttatcaaattatttccgatctgtaatagttttaagcccagat
gacttacttccaagtatatatttatgtctcaatcaattagcacctgcttatgaagggatt
gaattaggggtggcagaaacaaatttgatgaaagctatagcacaatgtactggtagaaca
ttagctcaaattaaagcagacgtccaaacagttggggatttgggcatcgtagcagaagga
agtcgttccaatcaaagaactatgtttcgtcctgctccactgacagtatcgaatgtatat
actaggctgaaagagatcgcacaaatgactggttctgcgtctttaactaaaaaattggat
aaaattcaatcgctttttgtagcgtgtcgttttactgaagccagatatctgattcggtcc
ctagccggcaaacttcgaattggtctagcagaacaatctgtgttacaagctttggcacta
gcatgtactatgacaccaccaatacaaagttatccaccggaagttttagacgtgagtaag
aaaatgtcaagcgatgcctttaaacaaaagtacgacgaaactgcgcttactcttaaaaca
acatattgtgaatgtccaaattatgacaaaataattcctgttttattaaaagaggggatt
gaagaattaccaaacaaatgtaaaattacacctggcatacctatgaagccaatgttggca
catcctactaaaggtgtgcaagaagtattaacgcgtttcgatgggttgaaatttacttgt
gaatggaagtatgatggagaaagagcgcagattcatttagccgaggatggtaaaattaat
atttacagtagaaatcaagaaaataataccagcaaatatcctgatattataggaagatta
aaaaatactcaaggtaaagaagttaaaagttgtatccttgactgtgaagccgtagcttgg
gataacgagaataaacaaatcctacctttccaaatactcagtacaagaaaacgcaaggat
gcgaacgaagcagacattaaagttcaagtatgtgtgttcatgtttgatttattgtattta
aatggagaaccactggtacaacaacctttcataaaacgtcgtgaattattgaaaaagaat
ttcaaagaagtaattggagaatggaaatttgcaactagtttagatacttcgactatggaa
caagtgcaagatttcttagatgaatcagtcaaaggaaattgcgagggtcttatggtgaag
accttagaacaggatgcaacatacgagattgctaaacgttctcggaattggttaaaattg
aagaaagattatttagaaggtgtgggtgatacattagacgtggttgtcattggtggctat
ataggcaaaggaaaaaggacaggaacctatggaggatttcttttagcttgttatgatcaa
gagaatgaggaatatcaaagtgtttgtaagattggtactggatttagtgaagaagacctt
caaaagcacacagaattcttcaaagaacatataataccacaaactaagtcctactatcgt
tatgactcgtctctcgaacctgatcactggttcgaaccagttcaattatgggaaattaaa
tgtgcagatctttctttgtcacctgttcataaggcagccgttggtattattgatccagag
aaaggaatatctttgcgatttccacgttttgtccgcattcgcgatgataaaaacaatgag
gatgctacatcagcgcaacaaattgcaaatatgtacaatagtcaagagcagataaaaaat
cagacatcatcaacaaaagtagctgaagaagacttttattga

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