Bombus affinis (rusty patched bumble bee): 126922088
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Entry
126922088 CDS
T09368
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126922088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baff03400
]
126922088
Enzymes [BR:
baff01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126922088
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126922088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
126922088
NCBI-ProteinID:
XP_050590266
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Position
11:complement(3684392..3691741)
Genome browser
AA seq
897 aa
AA seq
DB search
MNGTLASKIEFVELCDIFEKIFDTKKSQISRKADILEQFFEKCRNMGRELKTEYPDMDVS
LFPILRLILPDLEREREAYNLKEKSLANLYIRIFCFGKNSKDAIKLKQYKTPTAKNIIRR
DFADRAYSVLKNRFQYEGPHITIEQINFILDNLSLKRNETFKDLLRKSNALEFKWITRII
LKSLNLGIGTKKILQVFHPDANSLFNVSSNLRQICDTLYDPQLRYHHDIQVFSHFKPMLL
EECQIENVKKLFNGGKEYFVQCKYDGERSQIHMKDGKYKYFTRQGYDITNKPGFGETTSA
GFMSGVFGRLLNPQVKSVILDGELMGWHKERKLLGSKGMNYDVKKLSKDSPYQQCFVAFD
IIMHNDILLNNEPYEKRLEILKDVFKEEEGCLLLCKSTRVSKSEKLCEIFNESIRNKEEG
IVVKKCDSKYKPNVRNGTDCYKIKAEYSGDLVHDIDLIILGGYYNRKFMGLVNSFLMGVA
SSTKTPGENPTKFLSVVSVSSGLSMNTLKELGKMFKDKWQTERPENVIPPKVEPNLWIRP
EDSIILTIKASEMICSNNYPTGYSLRFPRVTSVREDKPWYDVCTTDNLKLLIKDTQPIQK
LTKREISYEDIEEAHESKVQQESKTKKQRLIKYEEKSMKPNIYDNPPVYLTRLFDDKEIC
VINGVDELPKEQIEEILVQHRANVVQNPLKENYCTIVGNVKTVRASCIIQSKKYDVVTLD
WFRRVTKKENWSSLQDFLPWDLICSRESTKRRLAQYYDDYYDHFTIDADEESLLRSFKKV
EDTEQNVKFDYTEMKKIDQELFDSEVSPYSLFRGIVGYFYDPSDLSKFEFRFMGGTIRET
IDDSVTNIFINNNSTGTELQNLIENKSQASLTIIKSEWIGECFKQNTIIPYSVYLVQ
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaacattagctagtaaaattgaatttgtggaattgtgcgatatattcgagaaa
atctttgatactaagaaatcacaaatatctaggaaagctgatattttggagcagttcttt
gagaaatgtcgtaatatgggtcgtgaattaaaaactgagtatccagatatggatgtttca
ctctttcctatattaagattaatcttaccagatcttgaacgagaacgtgaggcatataat
ttaaaagaaaagtctcttgccaatctttatattcgtatattttgtttcgggaaaaacagt
aaggatgcaattaaacttaaacagtacaaaactccaactgcaaaaaatattatacgtcgc
gattttgcggatagagcttattcggttttgaaaaatcgttttcaatatgaaggtcctcat
atcacaatagaacaaatcaattttattctcgataatttatcgttaaaaagaaatgaaacg
ttcaaagatttattaaggaaatcaaacgcattagaatttaaatggataacacgaattatt
ctaaaaagtttgaatcttggtattggaacgaaaaagatattgcaagtttttcatccagat
gcaaattcattgtttaatgtatcatctaatttgcgacaaatttgtgacacattatatgat
cctcaattgaggtatcatcatgatattcaagttttttctcattttaagcctatgttatta
gaagaatgtcaaattgagaatgtaaagaaactttttaatggaggaaaagaatactttgtg
caatgcaaatatgatggcgagcgatctcaaatacatatgaaagatggcaaatataagtat
tttacaagacaaggatatgatattacaaataagcctggttttggggaaactacttctgca
ggttttatgagcggtgtatttggtcgattattaaatcctcaagtaaaatcagtcatttta
gatggtgaattaatgggttggcataaagaaaggaaattgttaggctcaaagggaatgaac
tatgatgttaagaaactctcaaaagatagtccttatcaacaatgttttgttgcatttgat
attattatgcataatgatattttacttaataacgaaccttatgaaaaaagacttgaaatt
ttaaaagatgtatttaaagaggaagaaggttgccttttattatgtaaatctactagagtt
tctaaaagcgagaaattatgtgaaatattcaatgaaagtattaggaataaagaagaagga
attgtagtaaaaaaatgtgatagtaaatataaaccaaatgtacgaaatggtactgattgt
tataaaataaaagctgagtattctggagatttggtacacgatatagatttaattattctc
ggtggttattacaatagaaaatttatgggtttagtaaatagttttttaatgggcgtagct
tcttctacaaaaactcctggtgaaaatcctacaaaatttttatctgtagtatcagtcagt
agtggtctttctatgaatacattgaaagaactcggaaaaatgtttaaagataagtggcaa
acagaacgacctgaaaatgttatacctcccaaggttgagccaaatttgtggattcgtcct
gaggattccatcattttgaccataaaagcatcggaaatgatatgtagtaataattatcca
accggatacagtttacgatttcctagagttacaagtgttagagaggataaaccgtggtat
gacgtttgtacaactgataacttgaaattattaattaaggatacgcaaccaattcagaaa
ttaacaaaacgagaaatatcttatgaagatatagaagaagcacatgaaagtaaagtacaa
caagaaagtaaaacaaagaaacaacgtttaataaaatatgaagagaaatcaatgaaacca
aacatttatgacaatccaccggtttatcttacccgactttttgatgataaagaaatttgc
gtgataaatggcgtcgatgagttacctaaagaacagattgaagaaattcttgtgcaacac
agagcaaatgttgtacaaaaccctttaaaagaaaattactgtactattgttggtaacgtt
aaaacggtaagagcaagttgcatcatacaaagtaaaaagtatgatgtggtaacattggat
tggtttagacgggttaccaaaaaagaaaattggtcgtcattacaagactttttaccatgg
gatttgatatgtagtcgtgaatcaacgaaacgacgattagcacaatattatgatgattat
tatgatcactttactatagatgctgacgaagagagtttattacgttcgttcaaaaaagtc
gaagatacggagcaaaatgttaaatttgattatacagaaatgaaaaaaatagatcaagaa
ttatttgatagtgaagtgtcaccttattctctatttcgtggtatcgtgggatatttttat
gacccatcagatttatcaaaatttgaatttcgttttatgggtggtactattagagaaact
attgacgattctgtgacaaatatttttatcaataataattccaccggtactgaactgcaa
aatttaattgagaataaatcccaggcatcgttaacaattattaaaagcgaatggatcgga
gaatgctttaaacaaaatacaattattccttattctgtatacctggtccaataa
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