Bombus affinis (rusty patched bumble bee): 126925435
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Entry
126925435 CDS
T09368
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126925435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126925435
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126925435
Spliceosome [BR:
baff03041
]
Complex C
Other components
Step II factors
126925435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_16
FMP27-BLTP2_C
Motif
Other DBs
NCBI-GeneID:
126925435
NCBI-ProteinID:
XP_050596938
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All DBs
Position
16:complement(3911476..3916258)
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AA seq
1197 aa
AA seq
DB search
MDEVSKLEHLSLVSKICTELENHLGLNDKDLAEFIIHLAEKNDTFDKFKKVLIENGAEFS
ESFMANLLRIIQHMKPTKLEEKSLKPPTKQDELAQKFPALALPNEEPKIVDEKELKDDDI
VSSAMASLEELAPSKKSNKEDSKKENQSIDNNDKKNKHTRRSRSRDRRRHRSRSSGRRDR
RHRSRSRSRSRDRSRSRDRRRHRSRDRKRSRSRDRKFHRDKYSNKLDRSRSRSVEELSMD
PEVGKIYSGKVANIVPFGCFVQLEGLKRRWEGLVHISQLRREGRVASASDVVSRGQKVLV
KVLNIGGQKVSLSMKDVDQETGRDLNPVVAVTKTEEDEKHLRNPDRPTSLLELQGNWDED
ETYSRKRVQRLSSPEKWEIKQMLAASCIDRSELPEFDTETGILPREDDEEEDVEIELVEE
EPPFLHGHGRALGDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMLQREQEMDSVPTG
LNKNWIDPLPEAESRTLAANMRGIGLQTQDLPEWKKHVIGGKKSSFGKKTNLTLLEQRQS
LPIYKLRDDLVKAVTDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM
SVAKRVAEEFGCRLGQEVGYTIRFEDCTGPETNIKYMTDGMLLRECLMDLDLKTYSVIML
DEAHERTIHTDVLFGLLKQAVGRRPDLKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFEV
EVMYTKEPETDYLDAALITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDV
PELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKV
YNSKTGMDSLIVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTN
LATTVLQLKTMGINDLLHFDFMDAPPVESLIMALESLHSLSALDNEGLLTRLGRRMAEFP
LEPNLSKMLIMSVHLQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPEGDHLT
LLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRIQ
KAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMRE
VTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtctcaaaactggaacatctatctttggtttcaaaaatatgcacggaattg
gaaaatcacttaggactaaatgacaaagatttggctgaattcataatccatttggcagag
aaaaatgatacatttgataaatttaaaaaagttcttattgaaaatggcgctgaattttct
gaatcttttatggccaatttgctaagaataatacagcatatgaagccaactaaactggag
gagaaatcattgaaacctccgacaaagcaagatgaactagctcaaaaattccctgccctg
gcactgccaaacgaggaaccaaaaattgtggatgaaaaagaactcaaagacgatgatata
gttagcagtgctatggcaagtttggaggaactagcaccatcaaaaaagtctaataaggaa
gatagcaagaaagagaaccaatcaatcgataataatgataagaagaacaaacacacaaga
agaagtagatcgagagatagaagaagacacagatcacgttcatcaggtcgcagagacaga
aggcataggtctagatctcgttcaaggtcacgagatcgttcaagatccagagatagaaga
cgtcacaggtccagagatcgtaaaagatctagatcacgagacagaaaatttcatagggac
aaatattccaataaacttgatcgatctagatcgcgatctgtagaggaactttccatggat
ccagaagtaggcaagatttattcaggcaaagtagctaatatcgttccttttggttgtttt
gttcaattggagggtttgaaacgaaggtgggaagggcttgttcatatctcacaattaaga
agggaaggaagagtcgccagtgctagcgatgtagtatctaggggtcagaaggtgctcgtg
aaagtcctcaatattggtggacaaaaggtttctttaagtatgaaggatgttgatcaggaa
accggcagggatctgaatcctgttgtggctgttaccaaaactgaagaagatgagaaacat
ttgagaaatccagatagacctacttccttgttagaactccaaggtaattgggacgaggac
gaaacttattctagaaaacgtgtgcaaagattgtcttctccagaaaagtgggaaattaaa
caaatgcttgctgcatcttgcatcgataggagtgaattgccagaattcgataccgaaaca
ggaatcctcccacgagaagacgatgaagaagaagacgttgaaatagagttagtggaagaa
gagccaccatttttacatggccatggaagagctcttggagacttgagtcctgttcgcata
gtaaaaaatcctgatggttctttagcgcaagctgcaatgatgcagagtgctttagcaaag
gaaaggagggaacaaaaaatgttgcaaagagaacaggaaatggattctgttccaacaggt
ctgaacaaaaattggattgaccctctaccagaagctgaaagtagaactctagctgcgaac
atgcgtggaatcggccttcaaacacaagatttgcctgagtggaagaaacacgtgatagga
ggaaaaaagtcttcttttggaaagaaaacaaatttaactcttcttgaacagcgccagagc
ttaccaatatataaactcagggatgatttagttaaagctgtgacggataatcaaatttta
atcgtaattggagaaacagggtcaggaaagaccacgcaaattacacagtatttagcagaa
gcaggattcacagcccgtggaaagattggctgtactcaacctagaagagtggctgccatg
tcagttgccaaaagagtggcagaagaattcggttgtcgtttaggacaagaagttggctac
acgattcgttttgaagactgtactggtccagaaaccaacataaagtatatgactgatggt
atgttgctaagagaatgtctcatggatttggatttgaagacatactctgtaattatgttg
gatgaggcacatgaacgtaccattcacacggacgttctttttggattgctgaaacaagct
gtagggagaaggccagatttaaaactaatcgttacaagtgcaactttggatgctgtcaaa
ttttcacaatacttcttcgaagcaccaatcttcactattcctggtagaacattcgaagta
gaagtcatgtataccaaagaaccagaaacagactatctggatgccgcactgataacagta
atgcagatacatttgagagaacctccaggagacatacttctattcctaactggtcaagaa
gaaatcgacacagcttgtgaaattttatacgaacgtatgaaatctttaggccctgatgtt
ccagagttaatcattttgcccgtgtattcggcgcttccatcggagatgcagacgagaata
tttgaaccagctccacctggttccagaaaagtggtaatagccaccaatatagcggaaact
agtttgactatcgatggaatttattacgtagttgatccaggatttgtgaaacagaaggtc
tataattctaaaactggaatggatagtcttatagtaacaccaataagtcaagcagctgcg
aaacaaagagcagggagggctggcagaactggtccaggaaaatgttatagactttatact
gaaagggcttatagggacgaaatgcttccgacgccggttccagaaatccaacgtactaat
ttagcaaccacggtattacaattaaagactatgggcatcaatgatctattacactttgat
tttatggatgctccacctgtcgaatcgctgattatggctttggaatctctacacagctta
agtgcattagataacgaaggtttgttaaccagattaggaagaaggatggcagagtttcct
ctagaacctaatttatctaagatgcttattatgagcgtacatcttcaatgttctgatgag
atattgaccatcgtcagcatgttatctgttcagaacgtcttctacagaccgaaagataag
caagctttagcagatcaaaagaaagcaaaattcaaccaaccggaaggcgatcatttaact
ctgttggcagtttataactcctggagaaataataaatttagtaatgcatggtgttatgaa
aattttgtgcaaattagaactttaaaacgcgctcaggatgttcggaaacaactattaggt
ataatggacagacacaaattggacgtagtatctgcgggtaaaaacactgtaagaattcag
aaagctgtttgttctggtttcttcagaaacgccgcaaagaaagatcctcaagaaggatat
agaaccttggtagatagccaagttgtctacattcatccaagtagcgcgttatttaacaga
caaccggaatgggtaatttatcatgaattggtccaaactacgaaagaatacatgagggaa
gtgacaactatagatccaaaatggttagtagagtttgcgccagcatttttcaaatttagc
gatccgaccaaacttagcaagtttaagaagaatcaaagattggaaccactttataataag
tacgaagaaccgaacgcttggcgaatatcaagggttcgaagaagacgtaattaa
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integrated database retrieval system
