Heyndrickxia coagulans 36D1: Bcoa_3265
Help
Entry
Bcoa_3265 CDS
T01628
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bag
Heyndrickxia coagulans 36D1
Pathway
bag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcoa_3265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bag03400
]
Bcoa_3265
Enzymes [BR:
bag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcoa_3265
DNA repair and recombination proteins [BR:
bag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcoa_3265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AEP02437
UniProt:
G2TMD9
LinkDB
All DBs
Position
3468369..3470210
Genome browser
AA seq
613 aa
AA seq
DB search
MKPMLPVLKWSLPDTGKWVYEIKYDGYRAILDWTEDGMRLWSRNGKDLLPRFPEIRTFLQ
TLEGRVKGQLPLRLDGELVLLENPYKAGFRELQRRGRMKAEAAAEQAKMRPAHYLVFDLL
MLGGEDMAGKPYLQRKKALENLCETLALPLSPAPGETARVQQIPFTRDASVLKETVKNFN
SEGIVAKQTDSKWEAGKRVETWIKVKNWKTAACFITAYDEKNGYFDVAVFKDGGIFPIGQ
FLFSMNPDEKQILTEAVRKNAANNENGVYTIDPSICVEIFYLEWDGANLREPHFHRFRFD
LSPDACTFEDFRLRNAAIPEEVEVTHPDKPLWKKRHVTKLDFLAYMREISPFMLPFLSDR
LLTVIRYPHGVFGEAFYQKNCPDYAPAFVDTAMHEDIRYIVCNDLKTLMWLANQLAVEYH
IPFQTVNSRFVSEIVFDFDPPSRDAFQLAVEAALLLKQVTDALHLESFVKISGNKGLQVY
IPLPDRQFSWEDTRLFTEFMAAYFISKSPEHFTIERMKKKRGGKLYVDFVQHAEGKTIIA
PYSMRGHEDALVAAPLFWEEVNASLSPYDFTIETVLSRVNRYGCPFARFFACKSGQPFAP
VLAFLKQNKGRPI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgttgccggttttaaaatggtctctgccagatacaggaaagtgggtatac
gaaattaaatatgacggttatcgcgcgatcctcgactggacagaagacggcatgcggtta
tggagccgcaacggaaaagatttgctgccccggtttccggaaatccgcacctttttgcaa
acgcttgaaggccgtgtaaaagggcagcttccgttacggcttgacggcgaacttgtgctg
cttgaaaatccgtataaagctggctttagggagctgcaacgccgcgggcggatgaaagct
gaagcagctgcagagcaggcgaaaatgcgccccgcccattatctcgtatttgatttgctc
atgcttggcggagaggatatggccggcaaaccgtatttgcagcgaaaaaaagcattggaa
aacttatgtgaaacgctcgcgctgccgctctcccccgccccgggcgaaacggcacgggtt
cagcaaatcccgttcacccgtgacgcatccgtcttaaaagagacggtgaaaaattttaac
agtgaaggcattgtcgcaaaacaaacggacagcaagtgggaagcgggaaaacgagttgaa
acatggataaaagtgaaaaattggaagacagccgcctgctttattacggcttacgacgag
aaaaacgggtatttcgatgtcgcagtgtttaaagatggcggcatttttccaatcggccag
tttcttttcagcatgaatccggacgaaaaacaaatcctcacagaagcggtcaggaaaaat
gccgcaaacaatgaaaacggcgtctacacgatcgatccttcgatttgcgtcgagatattt
tatttggaatgggacggcgccaatctgcgggaacctcatttccaccgcttccgctttgat
ctttcaccggatgcctgtacgtttgaagatttcaggctccgtaacgccgccattccggaa
gaagtggaagtgacgcatccggataaaccgctatggaaaaagcgccatgtgacaaagctc
gactttcttgcctatatgcgggaaatttctccttttatgctgccgtttctttcggacagg
cttttgaccgtcatccgttacccgcacggcgtcttcggcgaggcattttaccagaaaaac
tgccccgattatgcgcccgcttttgtggatacggctatgcatgaagacatccggtatatt
gtctgcaacgatttaaaaacactgatgtggctcgcaaaccagctggcggtggaataccat
atcccgtttcagaccgtaaacagtcgtttcgtcagtgagattgtatttgattttgacccc
ccttcccgggatgcgtttcaacttgcagtagaagcggctttgctgttaaaacaggtgacg
gatgcccttcatttggagagctttgtcaaaatttctggaaataaagggctgcaagtctac
attccattgccggacaggcaattctcatgggaagatacaaggctgttcacggaatttatg
gctgcttatttcatttcgaaatcgcctgaacattttacaatcgaacggatgaagaaaaaa
cggggcggaaaattatatgttgatttcgtccagcatgcggaaggaaaaacgatcattgca
ccttattcgatgcgcgggcatgaggatgcgcttgtggcggcgccgcttttctgggaagaa
gtaaacgcgtcgctttcgccgtatgactttaccattgaaacggtcctttcgcgtgtgaac
cggtacggctgcccgtttgcgcgattctttgcctgcaaaagcggccagccttttgccccg
gtacttgcatttttaaagcagaacaaagggcgccccatatag
DBGET
integrated database retrieval system
