Bacillus sp. LM 4-2: BsLM_1418
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Entry
BsLM_1418 CDS
T03908
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
balm
Bacillus sp. LM 4-2
Pathway
balm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BsLM_1418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
balm03400
]
BsLM_1418
Enzymes [BR:
balm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BsLM_1418
DNA repair and recombination proteins [BR:
balm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BsLM_1418
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKE23217
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Position
complement(1381540..1383363)
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AA seq
607 aa
AA seq
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MQPVLTSSPPIGAEWRYEVKYDGYRCILRIYSSGVTLTSRNGVELSSTFPEITQFAKTAF
QHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQESAHARPCCFLAFDLLER
SGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKETIQSIPCYDHFDQLWEMVIKYDGE
GIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPIASVS
HGMRDEEKSAIREIMEQHGHQTPSGEFSLEPSICASVQYLTILQGTLREVSFIGFEFQMD
WTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLLPFLKNRAV
TVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLCNQLALEFHVP
FQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFGITSYPKLSGNKGIQLYIP
LSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPY
STRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPLSAIL
NQLKKKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcagccggtcttaacttcgtcaccgccaatcggagcagaatggcgttacgaagtaaaa
tatgatgggtaccgctgtattctccgcatctattcttcaggtgtgaccttaaccagcaga
aatggtgtggagctcagcagcaccttccctgaaatcacacaattcgccaaaactgccttt
cagcacctagaaaaagagcttccgctgacacttgacggtgaaatcgtatgtttggtgaat
ccctgtcgtgcagattttgaacaccttcaagtgcgggggcgtttgaaaaggccagacaag
attcaggaatcggcacacgcgcggccgtgctgctttctcgcctttgatttgttagagcga
agcggagaagatgtaacgcttctttcgtatttagaccgcaaaaaatcgctgcgtgaactc
atatccgcagcaaagcttcctgcatctccagatccttacgcaaaagaaaccattcaatcc
attccctgttatgatcattttgatcaactctgggagatggtaataaaatatgacggagaa
ggaattgtagcgaagaaaacaaacagcaaatggcttgaaaagaagcggtcgtccgattgg
ctcaaatataaaaactttaaacaagcttatgtttgcataacagggttcaaccctaacaac
gggtttctgacggtatctgtgttaaaaaacggaataatgacaccgattgcctctgtctcg
cacggaatgcgcgatgaggaaaaaagcgctatacgcgagattatggaacagcacggacat
caaacaccctcaggcgaatttagtcttgaaccttcgatttgtgcatctgttcaatactta
acaattctccaaggcacattaagagaggtatcgtttatcggtttcgaattccaaatggac
tggaccgaatgcacgtatgcgcaagtcatacgacactccaaaccggttcacccaaagctc
cagttcacaagcctagataaaatcatatttgaaaagaataaaaaaacaaaagaagatttt
attcagtatatgattgaagtcagtgactatctgctcccatttctgaaaaaccgggctgtc
accgtcatccgctatccgcatggatctaggagcgaatcatttttccaaaaaaacaagccg
gactatgcgccggattttgttcaatctttctatgatggaagccatgaacatattgtctgt
gaggatatgtctacattgctatggctttgcaaccagcttgctttggagtttcacgttcct
tttcaaaccattaaaagcaggcgtccggctgagattgtcattgatttagacccgccttcg
cgagatgactttcttatggccgtgcaggccgcaaatgaactgaagcggctgttggattcc
tttggcatcacatcgtacccgaagctgtccggcaacaaaggcatccagctttatattccc
ttgtctcccgaggcatttacgtatgaagaaacacgccaatttacgcagctgatcgcagag
tactgcaccaatgcatttcccgagctatttaccactgaacgcttgattaaaaacagacac
ggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgattatctgtccctat
tcgacgagaggaaatgagcttgggactgttgcagccccgctctactggcatgaggtgcaa
tcatctttaacacccgctctgtttacaattgatacggtcatcgatcgaattaagaagcag
ggctgcccattttttgatttttaccgcaacccgcaagacgaaccgcttagcgctatattg
aatcagttgaagaaaaagagctga
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