Burkholderia ambifaria AMMD: Bamb_4403
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Entry
Bamb_4403 CDS
T00398
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
bam
Burkholderia ambifaria AMMD
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bam03000
]
Bamb_4403
Transcription factors [BR:
bam03000
]
Prokaryotic type
Helix-turn-helix
Other families
Bamb_4403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_5
HTH_IclR
HTH_29
HTH_23
HTH_30
Mg_chelatase
HTH_28
HTH_Tnp_ISL3
HTH_7
AAA_16
HTH_22
AAA_22
Phage-MuB_C
DUF1488
IstB_IS21
HTH_1
HTH_17
AAA
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ABI89955
UniProt:
Q0B7B8
LinkDB
All DBs
Position
2:1341099..1342985
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AA seq
628 aa
AA seq
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MPQPFVLPATAGRNDLLAQAHARSTAVGLRANERPDFSPLSRVALRELLDTNHALFAHAR
PVMENLHAQIADTQSLVLLTDADGVILHSIGDADFIEKANRVALCTGVSWAEGARGTNAI
GTALASGQALAVHGSEHFLRANHILTCSCAPIIDPFGRTLGTLDVSGDPRGFSPHTLALV
RMSAQLIENHLFANQCAEALRLRFHAHEDCVDSLFAGLVAFGPDGGLIAANRSAQFQLGA
TFDALQHHGCDALFGMHFGELAQQAARAAGAPFRLTLSTGVRVLARCEFAEAHKTAIAVS
PPASAVRLRAPDPDAITFATLDTGDARMAAVLERVAKIRGRDLPLLILGQTGTGKEWLAR
ALHQASPRADGPFVAVNCAALPDSLIEAELFGYEDGAFTGARKRGSPGKIAQADGGTLFL
DEIGDMPLAQQVRLMRVLQERAVMPLGGARAVPVDVRVVCATHRDLRAMIAEGTFREDLF
YRINGLAVTLPALAARTDLPALVERILARLARSEPMPGRVAADVLDAFMRHRWPGNLRQM
TNVLRTAGMLAEDEPEITLAHLPDDFWLDCDNSPTAKAPADTRAATTLQSHQAAVIDAVL
ARHGGNVSAAARELGLARNTVYRYLRRH
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaacctttcgtgctgcccgccaccgcgggccgcaacgacctgctcgcgcaggcg
catgcccgttcgaccgcggtcggcctgcgcgccaacgagcgccccgatttctcgccgctg
tcgcgcgtcgcgctgcgcgaactgctcgacacgaaccacgcgctgttcgcgcacgcgcgc
ccggtgatggagaacctccacgcgcagatcgccgacacgcaaagcctcgtgctgctcacc
gatgccgacggcgtgatcctgcacagcatcggcgacgcggacttcatcgagaaagccaac
cgcgtcgcgctgtgcaccggcgtgtcgtgggccgaaggcgcacgcggcaccaacgcgatc
ggcaccgcgctcgcgtcgggccaggcgctcgccgtgcatgggtccgaacacttcctgcgc
gcgaaccatatcctcacctgctcgtgcgcgccgatcatcgacccgttcggccgcacgctc
ggcacgctcgacgtgagcggcgacccgcgcggcttcagcccccatacgctcgcgctcgtt
cggatgtccgcgcaactgatcgagaaccacctgttcgcgaaccagtgcgcggaagcgctg
cggctgcgcttccatgcacacgaggattgcgtggactcgctgttcgccgggctcgtcgcg
ttcggccccgacggcgggctgatcgccgcgaatcgcagcgcgcaatttcagctcggcgcc
acgttcgatgcgttgcagcatcacggctgcgacgcactgttcggcatgcacttcggcgaa
ctcgcgcagcaggcggcccgcgccgccggcgcaccgttccgcctgacgctgtcgaccggc
gtgcgcgtgctcgcgcgctgcgaattcgcggaagcgcacaagacggccatcgccgtctcg
ccgcccgcctccgccgtgcgcctgcgcgcgccggaccccgacgccatcacgttcgcgacg
ctcgacaccggcgatgcgcggatggccgccgtgctcgaacgcgtcgcgaagatccgcgga
cgcgacctgccgctgctgatcctcggccagaccggcaccggcaaggaatggctcgcgcgt
gcgctgcatcaggcgtcgccgcgcgcggacggaccgttcgtcgcggtcaactgtgcggcg
ctgccggattcgctgatcgaggccgaactgttcggctacgaggacggcgcattcaccggc
gcgcgcaagcgcggcagccccggcaagatcgcgcaggccgacggcggcacgctgtttctc
gacgaaatcggcgacatgccgctcgcgcagcaggtcaggctgatgcgcgtgctgcaggag
cgcgcggtgatgccgctcggaggcgcacgcgcggtgccggtcgacgtgcgcgtggtctgc
gcgacccaccgcgacctgcgcgcgatgatcgcggaaggcacgttccgcgaagacctgttc
taccgtatcaacggactcgcggtcacgctgccggcgctcgccgcccgcaccgacctgccg
gcgctggtcgagcgaattctcgcgcggcttgcgcgcagcgaaccgatgccgggccgcgtc
gcggccgacgtactcgacgcgttcatgcggcaccgctggcccggcaacctgaggcaaatg
accaacgtgctgcgtacggccggcatgctcgccgaggacgaacccgaaatcacgctcgcg
cacttgccggacgatttctggctcgactgcgacaactcgcccacagcgaaagcaccggcc
gatacgcgcgcagcgacgacgctgcagagccaccaggccgcggtgatcgacgcggtgctc
gcgcggcatggcggcaacgtatcggccgccgcgcgtgagctcgggctcgcgcgcaacacc
gtgtaccgctacctgcggcgacactga
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