KEGG   Bacillus velezensis NAU-B3: BAPNAU_2446
Entry
BAPNAU_2446       CDS       T02859                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bamb  Bacillus velezensis NAU-B3
Pathway
bamb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bamb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BAPNAU_2446 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bamb03400]
    BAPNAU_2446 (ligD)
Enzymes [BR:bamb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BAPNAU_2446 (ligD)
DNA repair and recombination proteins [BR:bamb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BAPNAU_2446 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M RNA_ligase DUF2532
Other DBs
NCBI-ProteinID: CDH96226
LinkDB
Position
2651115..2652938
AA seq 607 aa
MQPILTSEPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFAARCF
QHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTESIESTADRRPCRFLAFDLLVL
EGAGTVSLPYVKRKRALSKLFKEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVRHDGE
GVVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAIPIASVS
HGMQAEEKNAVRTIMETHGKKQKSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQFEMD
WTECTYQQLILRSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAV
TVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALEFHVP
FQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQLYIP
LSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPY
STRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPLSIVL
EQIKRKS
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgcagccgattttgacctctgaaccgcctgaaggcagtgagtggcgctatgaggtaaag
tatgacggattccgctgtcttctccgcatagacgaaagcggcgttacattaaccagcaga
aacggacagacgctgacgaatcaatttccggaaatcacggcttttgcggcccggtgtttt
cagcacatgaaagacaggttccccattacgcttgacggagagcttgtctatttaatcaat
ccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaacggacggaatca
attgaaagcaccgctgatagacggccgtgccgctttctggcatttgatctcctcgttctg
gaaggcgccggcaccgtctcattaccgtatgtgaaacggaagcgcgccctttccaaactg
tttaaagaagcaaatcttcccgcctgccctcatcacttagcggaagaagcgattcaatac
attccggaacacactgactttgatgcgctttgggacaaggtcgtccgccatgacggagaa
ggtgtcgtagcaaaaagagcatcaagcggctgggcggaaaataaacgctctcccgactgg
caaaagtataaacatatgaaaacggcacatgtgctattaaccgggtttaatccgaagaac
gggtatgtaacagcctctgttttaaaagacggcaccgccatcccgatcgcttccgtttcc
cacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggagacccacggaaaa
aaacaaaaaagcggcgagtatacacttgagccttctatctgcatgaccgtgcagtattta
accatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcagtttgaaatggat
tggacggaatgcacgtatcagcagcttatcctccgctctaaaacgctgccgccgaagctg
cagttcacaagcctggataagatcgtttttaaaaaacgtgaaaaaacgaaagcagatttc
cttagttatatggtgaaaatgagcgattttcttatgccctttcttaaagatcgggccgtc
acggtgatccgttatccgcacggcgcgcctggcgaatctttttttcaaaaaaacaaaccg
gactacacgccggactttgtctcaagcgtgtttgacgggagccacgagcacatcgtatgc
agcagcataccgtcacttctatggctggccaatcagctggcgcttgaatttcacgttccg
tttcagacagtgcattctgaaagacccgcagagattgtcattgaccttgatcctccgtca
aggaatgattttcccatggcagtggaggctgcgcatgtgctgaaacagctgtttgactca
ttcagcattacgtcattcccgaagctctccggaaataaaggcattcagctctacatcccg
ctttcaccggaagcattcacctatgaagaaacccgtgcgttcacaatgctcatcgccgat
tattgcgtcaggacgcgcccggatctttttacgacagagcggtttatcaaaaaccgaaac
ggcaggctctacctagattatttgcagcatgccgaagggaaaaccattatcgccccttat
tcgacccggggcaacgaattgggaacggttgcggctcccctttattggagcgaagtcaac
tcctctttaacacctgatgattatacgatcgatacagtagtgaaccgcgtcaggacagag
ggagatccgttttatgatttttaccggaatccgcaggacggcccgctttcaatcgtgctt
gagcaaatcaagagaaagagctga

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