Bacillus velezensis SQR9: V529_12680
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Entry
V529_12680 CDS
T03384
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bamy
Bacillus velezensis SQR9
Pathway
bamy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
V529_12680 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamy03400
]
V529_12680 (ligD)
Enzymes [BR:
bamy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
V529_12680 (ligD)
DNA repair and recombination proteins [BR:
bamy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
V529_12680 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
AHZ15294
LinkDB
All DBs
Position
complement(1307554..1309389)
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AA seq
611 aa
AA seq
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MVLTMQPILISVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
ALCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFD
LLVLEGAGTVSLPYVKRKRALSKLLNEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVR
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQKSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSNIPSLLWLANQLALE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
SIVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattttgatctctgtaccgcctgaaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggcgttaca
ttaaccagcagaaacggacagacgctgacgaatcaatttccggaaatcacggcttttgcg
gccctgtgttttcagcacatgaaagacaggttccccattacgcttgacggagagcttgtc
tatttaatcaatccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaa
cggacggaagcaattgaaagcaccgctgatagacggccgtgccgctttctggcatttgat
ctcctcgttctggaaggcgccggcaccgtctcattaccgtatgtgaaacggaaacgcgcc
ctttccaaactgcttaacgaagcaaatcttcccgcctgccctcatcacttagcggaagaa
gcgattcaatacattccggaacacactgactttgatgcgctttgggacaaggtcgtccgc
catgacggagaaggtatcgtagcaaaaagggcttccagcggctgggcggaaaataaacgc
tctcccgactggcagaagtataaacatatgaaaacggcacatgtgctattaaccgggttt
aacccgaagaacgggtatgtaacggcctctgttttaaaagacggcaccgccgtcccgatc
gcttccgtttcccacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaacaaaaaagcggcgagtatacacttgagccttctatctgcatgacc
gtgcagtatttaaccatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcag
tttgaaatggattggacggaatgcacgtatcagcagcttatccttcactctaaaacgctg
ccgccgaagctgcagttcacaagcctggataagattgtttttaaaaaacgtgaaaaaacg
aaagcagatttccttagttatatggtgaaaatgagcgattttcttatgccctttcttaaa
gatcgggccgtcacggtgatccgttatccgcacggcgcgcccggcgaatctttttttcaa
aaaaacaaaccggactacacgccggactttgtctcaagcgtgtttgacgggagccacgag
cacatcgtatgcagcaacataccgtcacttttatggctggctaatcagctggcgcttgaa
tttcacgttccgtttcagacagtgcattccgaaaggcccgcagagattgtcattgacctt
gatcccccgtcaaggaatgatttccctatggctgtggaggctgcgcatgtgctgaaacag
ctgtttgactcattcagcattacgtcattcccgaagctctccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctatgaagaaacccgtgcgttcacaatg
ctcatcgccgattattgcgtcaggacgcggccggatctttttacgacagagcggtttatc
aaaaaccgaaacggcaggctttacctagattatttgcagcatgccgaagggaaaaccatt
atcgccccctattcgacccggggcaacgaattgggaacggttgcggctcccctttattgg
agcgaagtcaactcctctttaacacctgatgattatacgatcgatacagtagtgaaccgc
gtaaggacagagggagatccgttttatgatttttaccggaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga
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