KEGG   Bifidobacterium animalis subsp. lactis ATCC 27673: BLAC_06725
Entry
BLAC_06725        CDS       T02862                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
banl  Bifidobacterium animalis subsp. lactis ATCC 27673
Pathway
banl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:banl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BLAC_06725 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:banl03021]
    BLAC_06725 (rpoB)
   03400 DNA repair and recombination proteins [BR:banl03400]
    BLAC_06725 (rpoB)
Enzymes [BR:banl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BLAC_06725 (rpoB)
Transcription machinery [BR:banl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BLAC_06725 (rpoB)
DNA repair and recombination proteins [BR:banl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BLAC_06725 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887
Other DBs
NCBI-ProteinID: AGW85518
LinkDB
Position
complement(1583296..1586856)
AA seq 1186 aa
MSQTTTNTTSVTARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLVGNERW
KKRVEEDEANGTNTVPHVSGLDEVFHEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEK
DYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGV
YFDRQPDRTSDKEIFGAKIIPSRGAWLEFEIDKRDFLGVRVDRKRKQSAIVFLMAIGMTR
SEIRDAFKDYPLVLDALEKETIDSEDAALVDLYRKIRPADAATPEAGRTLLDSFYFNTKR
YDLARVGRYKINRKLGLEKDYNDRSLSREDIIATIKYLVTLHAGDATFPGKRDGEDVELR
VDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVN
ATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMC
PIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVENGHVTDEVVYMTADREVEHVIAQA
NQKLDENGNFVEKEALVRDAAGEAEDVPVEMVDYMDVSPRQMVSVGASLIPFLEHDEGHR
ALMGTNMQRQAVPLIKSERPLVGTGAEWRAAVDSGDVILAEKPGVVIYVSADIIRVMNDD
GTTSSYKLAKFQRSNQTTCYNQVPLIHDGERVEKGTVLADGPATEKGEMALGKNLLVAFM
PWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANL
DERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGET
GTVIAVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILP
EEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWVAHAGWDISLDPDMEAEWKKMV
PKGAEKGEPGTPVATPVFDGVRQDVLKGLLSTTLTDRDGNKLVGDNGKATLFDGRTGEPY
PKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVLN
AEGVAIDMKDEDDDPVSSSNDLGFNIGARPDAAAKADQVADEPEYR
NT seq 3561 nt   +upstreamnt  +downstreamnt
ttgtcacagactacgacgaataccacctccgtcaccgcacgcgcagatcagcatgacatc
gatctgcacaaggcttcggaccgtgtgaatttcggctccatcaaagaacccatcgacgtg
ccgtacctcctcggcgtgcagaccgacagcttcgactggctcgtcggcaacgagcgctgg
aagaagcgcgtggaggaagacgaggcgaacggcaccaacaccgtgccgcacgtctccgga
ctcgatgaggtgttccacgagatctccccgatcgagaacttcgcacagaccatgagcctg
acgttctccgacccatacttcgaggaaccgcgccacaccgtgcaggaatgcaaggagaag
gactacacctactccgcgccgctgtacgtgaacgccgagttcgagaacggcgagaccggc
gagatcaagtcccagaccgtgttcatgggtgacttcccgctgcagaccccgcacggcacg
ttcatcatcggcggcaccgagcgagtgatcgtctcccagctcgtgcgttccccgggcgtc
tacttcgaccgtcagccggaccgcacctccgacaaggagatcttcggcgccaagatcatt
ccgagccgtggcgcatggctcgagttcgagatcgacaagcgcgacttcctcggagtgcgc
gtggaccgcaagcgcaagcagtcggccatcgtcttcctcatggcgatcggcatgacccgc
agcgagatccgcgacgcgttcaaggattacccgctcgtgctcgatgccctcgagaaggag
accatcgactctgaggacgccgccctcgtggacctgtaccgcaagattcgtccggccgat
gccgcgacgccggaagccggccgcacactgctcgactccttctacttcaacacgaagcgc
tacgatctggcccgcgtcggccgctacaagatcaaccgcaagctcggtctggagaaggat
tacaacgaccgcagcctgagccgcgaagacatcatcgccacgatcaagtacctcgtgacg
ctgcatgccggcgacgccaccttcccgggcaagcgtgacggcgaggacgtcgagctgcgc
gtggatgtcgacgacatcgaccacttcggcaaccgccgcatccgccaggtgggcgagctg
atccagaaccagctgcgcaccggcctgagccgcatggagcgcgtggtgcgcgaacgcatg
accacgcaggacgccgaggccatcacgccgcagtcactcatcaacattcgtccggtgaat
gcgacgatcaaggagttcttcggaacgtcccagctctcgcagttcatggatcagaacaac
ccgttggcgggcgtcacgaacaagcgccgtctctccgcgctgggccccggcggcctgtcg
cgcgaccgcgcctccatggaggtgcgagacgtgcacccgtcgcacttcggccgcatgtgc
ccgatcgagtcccctgaaggcccgaacatcggcctcatcggctcgctggcgaccttcggc
cgcatcaaccccttcggcttcatcgagaccccgtaccgcaaggtcgagaacggccatgtg
accgacgaggtcgtctacatgaccgctgaccgcgaggtcgagcacgtgatcgcccaggcc
aaccagaagctcgacgagaacggcaacttcgtcgagaaggaagccttggtgcgtgacgcc
gccggcgaggcggaggacgttccggtcgagatggtcgattacatggacgtctccccgcgc
cagatggtgtcggtcggcgcatcgctgattccgttcctcgagcacgatgaaggccaccga
gcgctcatgggtacgaacatgcagcgtcaggccgtcccgctcatcaagtccgagcgcccg
ctcgtgggcaccggcgccgaatggcgtgccgccgtcgattccggcgacgtcattctggcc
gagaagccgggcgtggtcatttacgtctccgccgacatcattcgtgtgatgaacgacgat
ggcacgacctcgagctacaagctggccaagttccagcgctccaaccagaccacctgctat
aaccaggtgccgctcatccacgacggcgaacgcgtggagaagggcaccgtgctggccgat
ggcccggccaccgagaagggcgagatggcgcttggcaagaacctgctggtcgccttcatg
ccttggaacggttacaactacgaggacgccgtgatcatctcgcagcgtctggtacaggac
gacacgctctcctcgatccacatcgaggagtacgagatcgacgcccgtgagaccaagctg
ggcgccgaggagatcacgcgcgacctgccgaacgtgggcgaggacgccgtggccaacctc
gacgagcgtggcatcattcgcattggtgcagaggtcgaggccggcgacatcctcgtgggc
aaggtcaccccgaagggcgagaccgagctcacgcctgaggagcgtctgcttcgcgccatc
ttcggcgagaagagccgcgaggtgcgcgacacctcgctgcgcgtgccccacggcgagacc
ggcaccgtgattgccgtcaaggagatcacacgcgaggatgccgaggaggacggcgacgag
ctgccgaacggcgtgaaccagatgatccgcgtctacatcgcgcaacaccgcaagatcacc
cagggcgacaagctctcgggccgtcacggcaacaagggcgtcatctcccgcattctgccg
gaagaggacatgccgttcctggcggacggcaccccggttgacatcatgctcaacccgctc
ggcgtgccttcgcgaatgaacctcggccaggtgctcgaactgcacttggggtgggtcgcc
catgccggctgggacatctccctcgatccggatatggaagccgaatggaagaagatggtg
ccgaagggcgccgagaagggcgagccgggcaccccggtggcaaccccggtgttcgacggc
gtgcgtcaggacgtgctcaagggcctgctttccacgacgctgaccgaccgcgacggcaac
aagctcgtcggcgacaacggcaaggcgacgctgttcgacggccgtactggcgaaccgtat
ccgaagccgatctccgtgggctacatgtacatgctgaagctccaccatctggtcgacgac
aagattcacgcgcgttccaccggcccgtactcgatgattacgcagcagccgttgggcggc
aaggcccagttcggcggccagcgcttcggcgagatggaggtgtgggccctcgaggcctac
ggtgccgcctatacgctgcacgagatgatgaccacgaagtccgatgacgtcgatggccgt
gtgcgtgtgtacggtgcgatcgtgaagggcgacaacctgccgcctgcaggcatccccgag
tcgttcaaggtgctgctcaaggaaatgcagtcgctgtccctcaacgtcgaagtgctcaac
gccgaaggcgtggccatcgacatgaaggacgaggacgacgatcctgtttcctcctccaac
gatctcggcttcaacatcggcgcccgcccggacgccgccgcgaaggccgaccaggtcgct
gacgaaccggaataccgctga

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