Bartonella apis: BBC0122_011600
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Entry
BBC0122_011600 CDS
T05086
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bapi
Bartonella apis
Pathway
bapi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bapi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBC0122_011600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bapi03400
]
BBC0122_011600
Enzymes [BR:
bapi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBC0122_011600
DNA repair and recombination proteins [BR:
bapi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBC0122_011600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQT47277
UniProt:
A0A1U9MH50
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All DBs
Position
1327166..1330669
Genome browser
AA seq
1167 aa
AA seq
DB search
MSIFKKNFSPEKLPRYVSFDGIVSGYEPFAIYKIAAEIGNKGPILYIARDGQKLDDLTHA
LAFIEAQMPVVQLPSWDCLPYDRVSPNPAISAKRMSALANIYSLLENPHPAIILTTANAV
MQKLPPRAAVAGQSITAKPGQSLDMDKLIHHLEHNGFERVSTVREVGDFAVRGGIVDLFA
PGSDAPVRLDFFGDSLETVRAFDPASQRTVKTLQEFSLEPMSEITLTPESISKFRTNYIR
SFGAAKPNDALYEAISEGRRFSGMEHWLPLFYDKLDTIFDYIGDIPVVFDHLVEEAMIER
NKLIEDYYQARLENHDPKDSSTPYNPVKPAALYLTPQDIDALSEKATHRIDFTPFAEPET
SGHYVLHSNVTTGRDFVEERTSENKNLFESVVEHVAQLRFRGNKVLLTGWSEGSLERLVQ
VLDEHGLKKIEKVGSLNTVKATPRDHITAAVVTIEHGFVAEDLVVVAEQDILGDRLVRSA
RRRKRNADFISDMTTLNSGDIVVHVDHGIGRFVGLKTIVAAGVPRDCLEIHYADEDRLFL
PVENIELLSRYGGEGTNVVLDKLGGVAWQARKAKLKKRLLEIAGHLIHVAAEREMRKAPV
LVPPTGSYDEFVARFPYDETDDQLRAIDAVLGDLAAGKPMDRLICGDVGFGKTEVAIRAA
FVAALNGFQVAVVVPTTLLARQHYKTFQARFQGLPVKIGQASRLVGAKELGAVKNGVRDG
TIDIVIGTHALLGSTMQFSRLGLLVVDEEQNFGVKQKERLKELKTDIHVLTLSATPIPRT
LQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLIVRETLMREHYRGGQSFYVCPRISDL
KVVEEFLSNHVPELKVTTAHGQMPPGQLDDIMNAFYDGQYDVLLSTSIVESGLDIPSANT
LIVHRADMFGLAALYQLRGRVGRSKQRAYALFTLPNQKVLTPGADRRLKVLQSLDTLGAG
FQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKDGTAINDSQWSPQIS
IGTAVMIPDNYVPDLPLRLSLYRRLAEIEELGDIDAFGAELIDRFGPLPVPVQHLLKVVY
IKSLCRQANVEKLDAGPKGVVIQFRENNFANGVGLVKWIGEQGSMAKIRPDQSVVFIRDW
PNADQRLNGAATVMTQLVKLAKEGAKK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatattcaaaaaaaatttcagtccggagaaattgcctcgatatgtcagctttgac
ggcatcgtttccggttatgaaccgtttgcaatttataaaatagcggctgaaatcggcaat
aaaggaccaattctttatattgctcgtgatggacaaaaacttgatgatctgacacacgca
ctcgcttttatagaagcgcagatgccggttgtgcaattgccgtcgtgggattgcctccct
tacgatcgggtctcgcccaatccggcgatttcggccaagcgtatgtcggcacttgcgaat
atttacagtcttttagaaaatccgcatccggcaattattcttacaacggcaaatgctgtg
atgcaaaaattgccaccccgtgcggccgttgcaggacaatcgattactgcaaagccaggg
cagagcctcgatatggacaagcttatccatcatcttgagcacaatggcttcgagcgggtt
tcgacagtccgtgaagtcggtgatttcgctgttcgcggcggaattgtcgatttgtttgca
ccaggaagcgatgcacctgtaagactggatttttttggcgatagtcttgaaacagtacgt
gcttttgacccagccagccaacgaacagtgaaaacgcttcaagaattttcgttggaaccg
atgagcgagataacgctgacaccggaatcgataagcaaattcagaacgaattacatccgc
tctttcggtgcagccaaaccgaatgacgcactctacgaagcgatttcggaaggccggcgt
ttttccggaatggaacattggctaccacttttttacgacaagcttgataccatttttgat
tatattggcgatattccggttgtgttcgatcatcttgtggaagaggcaatgatcgagcgc
aataaacttattgaagattattatcaggcgcgtttggaaaatcatgatccgaaggactct
tcaaccccctacaatcctgtaaaaccggccgcactttatctcactccacaagatattgat
gcgctctcggaaaaagccacccacagaatcgacttcacgccttttgccgagccggaaaca
tccggtcactatgtgcttcacagcaatgtcacaaccggtcgggattttgtcgaggaacgg
acctcggaaaacaagaatttgtttgaaagtgttgtcgagcatgttgctcaactccgtttc
cgtgggaacaaggttttgcttaccggctggagtgaaggctcgttagaacgtctggtgcag
gtgcttgacgaacatggcctcaaaaaaattgaaaaagttggttctctcaatacggtaaag
gctacgccacgcgatcacattactgctgcagtcgtcactatcgaacatggatttgttgcc
gaagatctggtcgttgttgccgaacaggatatattgggcgaccggttggtaaggtctgcg
cgccgacgcaagcgcaacgccgattttatttccgatatgacaacattgaacagcggagat
attgtcgttcacgtcgatcacggtatcggccggtttgtcggtttgaagacgattgtagct
gccggcgtgccaagagattgtctggaaatacattatgcagatgaagaccggcttttcctg
cctgtcgaaaatatcgagttgctctcgcgttacggtggagagggcacaaatgttgttctg
gataagcttggtggtgtggcgtggcaggcgagaaaagcaaaactcaaaaaacgtttgctc
gaaattgccggacatctcattcatgttgctgccgagcgcgaaatgcgaaaagcaccggtt
cttgttccgccgaccggtagctatgatgaatttgttgcccgtttcccatatgacgagaca
gacgaccaattgcgcgccattgatgcggtcctcggcgaccttgctgccggaaagccgatg
gatcggttgatttgcggtgatgtcgggttcggaaagacagaagttgcaatcagagctgca
tttgttgccgcattaaatggcttccaggttgcggtcgtggtgccaacaacgcttttggca
cgtcaacattataaaacgtttcaagcgcgttttcagggtttaccggtaaaaatcgggcaa
gcatcacgccttgtgggcgcaaaagaacttggcgcggttaaaaacggggtgcgcgacgga
acaatcgatattgtcatcggcacacatgcgcttcttggatcaacaatgcaattttcgcgg
ctcggcttgttggttgttgatgaagaacagaatttcggtgtcaaacagaaagaacgtctg
aaggaattgaagaccgacattcacgtattgaccctttcggcaactcctattccgcgcact
ctacaactggctttgaccggcgtcagggagttatcactcattacgacgccaccggtagac
cgtatggcggtgagaacatttgtctcgccgtttgaccctttgatcgtgcgggaaacgcta
atgcgtgaacattatcggggtgggcaaagcttctatgtctgcccgcgaatttccgatttg
aaagttgtagaggaatttctttccaatcatgttccggaactgaaggtcaccaccgcccac
gggcaaatgccgcccggccaacttgacgatattatgaatgctttttatgacgggcaatat
gacgtgttgctttcaaccagtatcgttgaatcgggccttgatattccctccgctaataca
ttgattgtccatcgtgccgatatgttcggtcttgcggcgctttatcagttacgcgggcgg
gtagggcgttccaagcagagagcctatgctttgtttacacttcccaaccagaaggttttg
acaccgggtgcagatcggcggctgaaagtcttgcaatctctcgatactctcggagcagga
ttccagctcgcaagtcacgatatggatataagaggagcgggtaatcttctcggcgaggaa
caatccggacatatcaaagaagtcggtttcgagctttatcaacaaatgttggaagaagcc
gttgccgaattgaaagacggaacagctattaacgatagtcagtggtcaccgcaaatctct
ataggaacagctgttatgattccggataactatgttcccgatctgcctttgcgcctgtcg
ctttatagacggctcgccgaaatcgaagagcttggcgatattgatgcattcggtgccgag
ctgattgatcgattcggtcctttaccggttccggttcagcatttgctcaaggttgtttat
atcaaatcgctatgtcggcaggcgaatgtcgagaaactggatgccggccccaaaggtgtc
gttatccaattcagggaaaacaactttgccaacggtgtcggtcttgtcaaatggattggc
gagcaggggagcatggcaaaaatacgccccgatcaaagcgtggtctttatccgcgattgg
ccaaacgccgatcaacgtctgaatggtgctgccacagtcatgacgcagctcgtaaaattg
gcgaaagaaggcgcaaagaaataa
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