Bacillus velezensis CAU B946: BACAU_1295
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Entry
BACAU_1295 CDS
T01692
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
baq
Bacillus velezensis CAU B946
Pathway
baq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BACAU_1295 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baq03400
]
BACAU_1295 (ligD)
Enzymes [BR:
baq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BACAU_1295 (ligD)
DNA repair and recombination proteins [BR:
baq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BACAU_1295 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
CCF04829
LinkDB
All DBs
Position
complement(1337275..1339098)
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AA seq
607 aa
AA seq
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MQPILTSVPPEGSEWRYEVKYDGFRCLLRIDENGVTLTSRNGQTLTNQFPEITAFAARCF
QHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIKSTAERRPCRFLAFDLLVL
EGAGTVSLPYVKRKRALSNLLKEANLPVCPHHLAEEAIQYIPEHTDFDALWDKVVRYDGE
GIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGIVVPIASVS
HGMQAEEKNAVRTIMETHGKKQKSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQFEMD
WTECTYQQLILRSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAV
TVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALEFHVP
FQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSMTSFPKLSGNKGIQLYIP
LSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPY
STRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPLSIVL
EQIKRKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgattttgacctctgtaccgcctgaaggcagtgagtggcgctatgaggtaaaa
tatgacggattccgctgtcttctccgcatagacgaaaacggtgttacattaaccagcaga
aacggacagacgctgacgaatcaatttccggaaatcacggcttttgcggcccggtgtttt
cagcacatgaaagacaggttccccattacgcttgacggagagcttgtctatttaatcaat
ccgtacagggcggactttgagcatcttcaaatccgcggacgtttaaaacgaaccgaagca
attaaaagcaccgctgagagacggccgtgccgctttctggcatttgatctcctcgttctg
gaaggcgccggcaccgtctcattaccgtatgtgaaacggaagcgcgccctttccaatctg
cttaaagaagcaaatcttcccgtctgccctcatcacttagcggaagaagcgattcaatac
attccggagcacactgactttgatgcgctttgggacaaggtcgtccgctatgacggagaa
ggtatcgtagccaaaagggcttccagcggatgggcggaaaataaacgctctcccgactgg
cagaagtataaacatatgaaaacggctcacgtgctattaaccggattcaatccgaagaac
gggtatgtgacggcctctgttttaaaagacggcatcgtcgtcccgatcgcttccgtgtcc
cacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggagacccacggaaaa
aaacaaaaaagcggcgagtatacacttgagccttctatctgcatgaccgtgcagtattta
accatattgcaggacacgctgcgtgaagtatcttttgtgtcctttcagtttgaaatggat
tggacggaatgcacgtatcagcagcttatcctccgctctaaaacgctgccgccgaagctg
cagttcacaagcctggataagatcgtttttaaaaaacgtgaaaaaacgaaagcagatttc
cttagttatatggtgaaaatgagcgattttcttatgccctttcttaaagatcgggccgtc
acggtgatccgttatccgcacggcgcgcctggcgaatctttctttcaaaaaaacaaaccg
gactacacgccggactttgtctcaagcgtgtttgacgggagccacgagcacatcgtatgc
agcagcataccgtcacttctatggctggctaatcagctggcgcttgaatttcacgttccg
tttcagacagtgcattctgaaaggcccgcagaaatcgtcattgatcttgatcctccgtca
aggaatgattttcctatggcagtggaggctgcgcatgtgctgaaacagctgtttgactca
ttcagcatgacgtcattcccgaagctctccggaaataaaggcattcagctttacatcccg
ctttcaccggaagcattcacctatgaagaaacccgtgctttcacaatgctcatcgccgat
tattgcgtcaggacacgcccggatctttttacgacagagcggtttatcaaaaaccgaaac
ggcaggctctacctagattatttgcagcatgccgaagggaaaaccattatcgccccctat
tcgacccggggcaacgaattgggaacggttgcggctcccctttattggagcgaagtcaac
tcctctttaacacctgatgattatacgatcgatacagtagtgaaccgcgtcaggacagag
ggagatccgttttatgatttttaccggaatccgcaggacggcccgctttcaatcgtgctt
gagcaaatcaagagaaagagctga
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