Bradyrhizobium arachidis: WN72_26150
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Entry
WN72_26150 CDS
T06898
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
barh
Bradyrhizobium arachidis
Pathway
barh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
barh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WN72_26150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
barh03400
]
WN72_26150 (mfd)
Enzymes [BR:
barh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WN72_26150 (mfd)
DNA repair and recombination proteins [BR:
barh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WN72_26150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOZ69406
LinkDB
All DBs
Position
complement(5470191..5473709)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKTGMKSPAELLTPGRAVTLANVAEGAEGLIVSDLARAIAARPKKPAVSLAVVCRDGGRM
QQLERALRFFAPDLPVLIFPAWDCQPYDRVSPHGGILAQRLTTLARLASLTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLEQPVRFDFFGDSLESIRSFDAETQRTLLDMRSLDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAVRERFKQILDYYEARREAMEHPGGGAIYKPLPPDRLYLTEEEWGKRLGDIPLARLTAF
SVPTDGTSVVDAGARKGRDFAPERNDTTVNVFESVVSHVMALQAQRKKVVIALWTEGSRD
RMTSMLRDHKLAHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLTAGDIVVHVDHGIGRFIGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQQGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLIATKELNQIKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVAEPAADRW
SPQITIGMPVLIPEDYVGDLSVRLSLYRRLADLDTEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRRANVEKIDAGPKGAVIVFRDNSFAYPDRLVTFIRSYGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAEAKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgggcatgaaatctccggccgagctgctcacgcccggccgcgcggtgacgctt
gccaatgtcgccgagggcgccgaaggcctgatcgtctccgacctggcgcgggccatcgcg
gcgcggccgaagaagccggccgtcagccttgccgtggtctgccgcgacggcggacgcatg
cagcagctcgaacgcgcgctgagattcttcgcgcccgatctgccggtgctgatctttccc
gcctgggactgccagccctatgaccgcgtctcgccgcatggcggcatcctggcgcagcgt
ctgaccacgctggcgcggctcgcctcgctcaccggcagcgacaagccgctgatcgtgctg
accaccgtgaacgcggtggtgcagcgcgtaccggcgcgcgagctggtcgcagcgcaggcg
ctgtcggttgcgcccggcaacgtcgtgccgatggacaccatcgtcgcctggctcgagcat
aacggttacaatcgctcctcgaccgtgcgcgagcccggcgaatatgcggtgcgcggcggc
atcctcgatctctttccggccggcctcgagcagccggtgcggttcgacttcttcggcgac
agtctggaatcgatccgcagcttcgatgccgagacccagcgcacgctgctcgacatgcgt
tcgctcgacctcgtgccgatctcggaattccagctcgtcactgacacgatccgccgcttc
cgcatgggctatgtcgccgaattcggcgcgcccgagcgcgacgatgcactgtacgaggcg
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgg
atggacacgctgttcgattatctgcaaggggcagccgtcgcgatcgagccgcaggccgag
gacgcggtgcgcgagcgcttcaagcagatcctcgactattacgaggcccgccgcgaggcg
atggagcatcccggcggcggcgcgatctacaagccgctgccgcccgaccggctctacctg
accgaggaggagtggggcaaacgcctcggcgacatcccgctggcgcggctgacggcgttc
tcggtgccgaccgacggcacctcggtcgtcgacgccggcgcgcgcaagggccgcgatttc
gcgccggagcgcaacgacaccacggtcaacgtgttcgagtccgtcgtcagccacgtgatg
gcgctgcaggcgcaacgcaagaaggtggtgatcgcgctgtggaccgaaggctcgcgtgac
cgcatgacgtcgatgctgcgcgaccacaagctcgcccacaccaccagcgtcaactcctgg
cgcacggtgcaggcgaccccgcgcaacgagaccatgctggccgtgctcggcctggaaagc
ggtttcgagaccgacgagatcgctgtcatcagcgagcaggacattctgggcgaccgcctg
gtgcggccgcgcaaggcaagccgcaagctcgacaatttcatctcggaggtgacgagtctc
accgcgggcgacatcgtcgtgcacgtcgaccacggcatcggtcgcttcatcggcctgcag
accctcgacgtcgccggcgcgccgcatgactgtctcgagctgcattatgccgccgagacc
aagctgttcttgccggtcgagaacatcgagctgttgtcgcgctacggctccgaccagacc
acggtcgagctggatcgactgggtggctccggctggcagacccgcaaggccaagctgaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgcggccgcgcgccatttgcac
gaggcgccaaagctgccggtgcagcagggcctctatgacgagttctgcgcgcgattcccc
tatgacgagaccgaggaccagttaggggccatcgaatccactctgaaagacctcgagctc
ggtcgtcccatggaccggctgatttgcggggacgtcggcttcggcaagactgaggttgcg
cttcgtgcggcgtttgccgttgcgctcgaaggcaagcaggtcgcggtcgtggtaccgacc
acgctgctcgcgcgccagcacgccaagaccttcaccgagcgcttcaagggctttccggtg
aacgtggcgcaggcctcgcgcctgatcgcgaccaaggagctgaaccagatcaagaagggc
attgctgacggttcagtcgacatcgtcgtcggcacccacgcgctgctcggcaaggccatc
aagttccgcgatctcggcctcgtcatcgtcgacgaggaacagcatttcggcgtcacccac
aaggagcggctgaaggcgctgcgttccgaggtgcacgtgctgacgctgtcggcaacgccg
atcccgcgcacgcttcagctcgcgctcacgggtgtccgcgagctctcgatcatcgcctcg
cccccggtcgatcgcctcgcggtgcgcaccttcgtggccccgcacgatcccctgatgatc
cgcgaggcgctcttgcgcgagcgctatcgcggcggccaggcgttctatgtcgtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcgcacggccagatgccgcccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacatcctgttgtcgaccacgatcgtggaatccggcctcgacattccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggccttgcccagctctaccag
ctccgcggccgcgtcggccgctccaagctgcgggcgtacgcgctgttcacgctgccggca
cagcagaagatcaccgcgcaggccgagcgccggctcacggtgctgcaatcgctggagacg
ctgggcgcgggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctc
ttgggcgaggagcagtccggccacatcaaggaggtcggcttcgagctctatcaatcgatg
ctggaggaggcgatcgtcaatctcaaggccggcgtcgccgagcccgcggccgaccgctgg
tcgccgcagatcaccatcggcatgcccgtgctcattcccgaggattacgtcggcgatctc
tcggtgcggctgtcgctgtaccggcgcctcgccgatctcgacaccgaggaggagatcgag
aacttcggcgccgagatgcgcgaccgcttcggcgtgctgccggacgaggtgcggtatctg
ttcaaggtcgccgcgatcaaggcgttctgccgcagggccaatgtcgagaagatcgacgcc
ggcccgaagggcgccgtcatcgtcttccgcgacaattccttcgcctatcctgatcgcctc
gtgaccttcatccgcagctacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcctgcaggactgggagacgccggaagaacgcctcgccggcaccacggagatcatgcgg
cagctggcgcagctcgcggaggctaagaaggcggcgtga
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