Burkholderia arboris: NLX30_11385
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Entry
NLX30_11385 CDS
T08608
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bari
Burkholderia arboris
Pathway
bari03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NLX30_11385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bari03400
]
NLX30_11385 (mfd)
Enzymes [BR:
bari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLX30_11385 (mfd)
DNA repair and recombination proteins [BR:
bari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NLX30_11385 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UTV53490
LinkDB
All DBs
Position
2355730..2359200
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASNPSASPVARVKPGQRFAFDGTHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPPGGWATALP
ELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ASDERFALGVAPLSSGFSVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGPKQGAAAAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcctccaacccgtccgcctcacccgttgcgcgcgtcaaacccggccag
cgcttcgccttcgacggcacgcacggctccgccgacgcgctcgccatcgcccgctatctc
gccgacaatcgccaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgacgcg
caacggctgtcgcaggaaatccgctatttttcgcccgacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccccaccaggacctcgtgtccgagcgg
cttgccacgctgcacgacctcggcgaaggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcctgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctgacgctggccggctacgag
catgtgagccaggtcgtgcggcccggcgaatactgcgtccgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgaccccgacacgcagcgcagcctctacccggtgcgcgacgtgcgcctg
ttgcccggccgcgagttcccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgaaactttcgagggtgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaacggccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgatctcgaagcgtcgatc
cgccgcttcaccgccgatacgaagcagcgccacgcgttcctcgcgcacgatcgcgagcgg
ccgatcctcgagccgcagcggctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccgcccggcggctgggcgaccgcgctgccc
gagctgaccgtcgaccgccatgcggacgacccgctcgcgtcgctgcgcaccttcgtcgaa
tcgtcgggcaagcgcgtgctgctgacggtcgaatcggccggccgccgcgaaacgatcctg
caactgctcgccgagcaccacctgcgccccgcatcgaacgaccacttcgcgggctggctc
gcgagcgacgaacgcttcgcgctcggcgtcgcgccgctgtcgagcggtttctcggtgccg
ggcgaaggctacgcgatcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggccagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtcggcgacccggtcgtccatgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggacctcggcgaaggcgaaaccgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgcccgtcgcccaattgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcaccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgaactgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccacgcgttctcgctcgacccgcgcgactacgtgaaattcgcggaaagc
ttcggcttcgaggagacgcccgaccaggccgccgcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggatcgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgaacagcacacgcagaccttcgccgaccgcttcgccgactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaacgcggccatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgtacgctcgggatggcgctcgaagggctgcgcgatttctcggtcatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgaactgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggcg
cggatcgtgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgctcggacaagttcggcctcgcgcagctg
caccagctgcgcggccgcgtcggccgctcgcaccaccaggcctatgcgtacctgctggtc
cacgatccgcagtcgctgaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggttcgggcttctatctcgcgatgcacgacctggagatccgcggcaccggc
gaagtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgccacgacggaaatcaacctgcacgcgccggcgatcctgccggccgactac
tgcgcagacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgaacacggc
gacgcgatcgacggcatccaggaagaactgatcgaccgcttcggcaagttgccgccgcag
gcgcacgcactcgtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgacgcgagcgaggtggcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcgccacatcaagctcgcggggcaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcggcccgaaacagggcgcggccgccgcggcgcgctga
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integrated database retrieval system
