Bartonella krasnovii OE 1-1: D1092_04075
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Entry
D1092_04075 CDS
T06421
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
barn
Bartonella krasnovii OE 1-1
Pathway
barn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
barn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1092_04075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
barn03400
]
D1092_04075 (mfd)
Enzymes [BR:
barn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1092_04075 (mfd)
DNA repair and recombination proteins [BR:
barn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D1092_04075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
AAA_16
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QEE12186
UniProt:
A0A5B9D0X1
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All DBs
Position
955854..959354
Genome browser
AA seq
1166 aa
AA seq
DB search
MTIFKKIIIPSNSPAHIIFDGITDGFEAFALAKLRLEIAQDKPLIYVVRDGTKIAHLEQV
LNFIEPNLPVLQFPAWDCLPYDRVSPGIAIMARRLSALARMANLRQNPHPAIILTTANAI
MQKLPPREMIEAQLIHAHVGQHHNMEHFIQFLETNGFERVTVVRDVGEFAVRGGILDIFS
PMDTQPLRLDFFGDTLESIRVFDPESQRTTRQKTEFLLQAMSEVVLKDECISRFKSNYTR
TFGVSQKNNMLYEAIAQGRRFAGMEHWLPFFYENLDTFFDHCGNLPLVFEHLIEEVFVER
YRLIEDYYNARKERENDKENMTSYHPIDPSLLHLTPERVFECVQQFSQRIDFSPFNIPQS
LGKTVIHAQVKQGYDFVKERNAQEKNVFSSVIDYIAFLRAAGKKVLLACWSEGSLNRLIQ
VLDEHGLKKIEVVKSLQTVKATPRDRILAAVIMIEHGFEAEDLAIIAEQDILGDRFIRSP
KRRKNNTNFISELSALNSGDLVVHIDHGIGQFVGLKTITTTGILRDCLEIKYAGGDLLFL
PVENIELLSRYGSEGTEVTLDKLGGVAWQARKARLKKHLLEMAGQLISIAAERATRAAPA
LLPPVGPFDEFVAGFPYEETEDQMNAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFISRFQGLPVKIGHVSRLVRGKELTQAKKGISDG
TIDIAIGTHALLSGAVDFLRLGLLIIDEEQHFGVKHKERLKQLKSDIHVLTLSATPIPRT
LGLALSGVRELSLITTPPIDRMAVRTFITPFDALVIRETLLREYYRGGQSFYVCPRISDL
AFVEEYLKMHVPELKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKILTSAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVAELKDGELSEDKQWSPQIS
LATTIMIPESFVPDLSLRMGLYRRLTELENLEQIDEFATELIDRFGPLPLEVQHILKVFH
IKILCRKAHVEKLDAGPKGIVIQFRNNYFANSIALVQWVEKQGSMAKIRPDQTIALIRNW
STVDERLIGAATIMTQLVEMAEQHSV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgactatatttaagaaaattatcattccttccaatagtcctgctcatataatttttgat
ggcattactgatggatttgaagcctttgcccttgccaaattaagattagaaattgcacaa
gataaaccactcatctatgtggtccgagacggaacaaaaattgcgcatttagaacaagtt
ttaaattttattgagcccaatttacctgtccttcaatttcctgcatgggattgtttgcct
tatgatcgcgtgtcaccaggaattgctattatggcacgtcgactatcagcattagcacgc
atggccaatttacgtcaaaatccacatcctgccattatattaacaacagcaaatgccatt
atgcaaaagttgcctcctcgtgaaatgatagaagctcagcttattcacgcacatgttggc
caacaccataacatggagcatttcattcaattcctagaaactaatggttttgaacgcgtt
acggttgtccgtgatgttggtgaatttgctgtgagaggaggaatactagatatcttttct
cctatggatacccagcctttacgtcttgatttctttggagataccctagaaagcattcgt
gtatttgatccagaaagtcaaagaacaacacgccaaaaaactgaatttttattacaggca
atgagcgaggttgttttgaaagatgaatgcatcagccgttttaaaagcaattatacccgt
acatttggtgtatcacaaaaaaataatatgctttatgaagcaattgctcaaggtcgacgt
tttgctggtatggaacattggcttccatttttttatgaaaatcttgatactttttttgat
cattgtggtaatttaccgcttgttttcgaacatcttatagaagaagtttttgttgagcgc
tatcgccttattgaagactattataacgcacgtaaagaacgcgaaaatgataaagaaaat
atgacgtcttatcatccgatagatcctagtcttctccatttaacgccagagcgtgttttt
gaatgtgtgcaacaattttcacagcgtattgatttttcgccttttaatattccacaaagt
ttgggaaaaacagttattcacgcacaagttaaacagggatatgattttgtaaaagagcgt
aatgcacaggaaaaaaatgttttttcaagtgttattgattatatcgcttttttacgcgct
gctggtaaaaaagtgcttttagcatgttggagtgaaggatctctcaatcgtttgatacaa
gttcttgatgagcatggattgaaaaaaatagaagttgtaaaatccttgcaaacagtcaaa
gcaaccccacgagatcgcatattagcagctgttatcatgatagaacatggttttgaggct
gaagatttagctattatagcagagcaagatatcttaggtgatcgcttcatcagatcgcca
aagcggcgtaaaaataatacaaattttatttctgaactttctgctttaaattctggtgat
cttgttgtgcatatcgatcatggtattggccaatttgttggtcttaaaaccattacaacc
actggaattttacgagattgccttgaaattaaatatgctggaggtgatttactcttttta
cctgttgaaaatattgaacttctttcacgttatggctcagaaggaacagaggtaacttta
gataaattagggggtgttgcttggcaagcacgtaaagctcggcttaaaaaacatttattg
gaaatggctgggcaattaattagtatagctgcggagcgtgcgacacgtgccgcacctgct
ttacttccaccagttggaccatttgatgagtttgttgctggttttccctatgaagagaca
gaagatcaaatgaacgccattgatgccgttttagatgatttagcctcaggaaagccgatg
gatcgcttgatatgcggtgatgttggctttggaaaaacagaagtggctattcgaagtgct
tttgttgcagcattaaatggatatcaggtcgctgttgttgtaccgacaactttgctttca
cgtcaacattacaagacatttatttcgcgttttcaaggattacctgttaaaattggtcat
gtatcaaggcttgtgagagggaaagaactcacacaagccaaaaaagggatttcagatggt
acgattgatattgctattggaacccatgcattattaagtggtgcagtcgattttttacgg
ttaggtcttcttatcattgatgaggagcaacattttggggtaaaacacaaagagcgttta
aaacagcttaaaagtgatattcatgttcttacactttcagcaacccccataccacgaact
ttaggattggcattatcgggggtccgtgaactttcattaatcaccactccacccattgat
agaatggcagttcgtacttttattactccatttgatgcccttgttatacgggaaacatta
cttcgagaatactaccgtggtggacaaagtttttatgtctgtcctcgtatttctgatctg
gcttttgtagaagaatatcttaaaatgcatgttccagagctcaagttcgttatagcacat
ggacaaatgccggctggacaacttgatgatattatgaatgcattttacgatggacaatat
gatgttttgctatcgacaaccattattgaatccggtcttgatattccaacagccaataca
ttaattgtgcatcgtgctgaaatgtttggtctttctgcactttatcagttacgagggagg
gtagggcgctcaaaacaacgtgcttatgcactttttacatttccttctggtaaaatttta
acatctgcagctgatcgtcgtcttaaagtgttacaatctcttgatacattaggggctggc
tttcaattggcaagtcacgatatggatattcgtggttcaggcaactttttaggtgaagaa
caatcaggacatatcaaagaagttggatttgaactctatcaaaaaatgcttgaagaagct
gttgctgaattaaaagatggagagctaagtgaggataagcaatggtcacctcaaatctca
ctcgctacgaccataatgataccagaaagctttgtgcctgatttatcattacgtatgggg
ctttaccgacgcttgacagaactcgaaaatttagaacagattgatgagtttgcaacggag
ttaatcgatcgttttggtcctttgccccttgaagttcaacatatccttaaagtttttcat
atcaaaatattgtgtcgaaaagcccatgtagaaaaattggatgctggaccaaagggtatt
gtcatacagtttcgcaataactattttgccaatagtattgctcttgttcaatgggtggaa
aaacaaggttcaatggcaaaaattcgtccagatcaaactattgctcttattcggaattgg
tctaccgttgatgaaagacttattggggctgctacgattatgacacagcttgtagaaatg
gcagaacaacattctgtttaa
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