Bifidobacterium asteroides: BAST_0886
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Entry
BAST_0886 CDS
T02271
Name
(GenBank) excinuclease ABC subunit A-like protein
KO
K03701
excinuclease ABC subunit A
Organism
bast
Bifidobacterium asteroides
Pathway
bast03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAST_0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bast03400
]
BAST_0886
DNA repair and recombination proteins [BR:
bast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAST_0886
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BAST_0886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
DnaJ_CXXCXGXG
nSTAND1
Anti-TRAP
AAA_29
AAA_16
ATPase
Viral_helicase1
AAA_15
TMEM106_N
MobB
AAA_22
RNase_E_G_Thio
DUF463
RbpA
DUF5351
Motif
Other DBs
NCBI-ProteinID:
AFU71466
UniProt:
K4IQX1
LinkDB
All DBs
Position
complement(1164212..1166755)
Genome browser
AA seq
847 aa
AA seq
DB search
MSDSGETSKELSAPPKAILVRGARVHNLRNLDVDIPLNHLVGIAGVSGSGKSSLALGVLY
AEGSRRYLESLSTYTRRRMTQAQRPQVESVRFLPPALALRQRPGVGGMRSTFGTATELLN
VLRLMFSRLASHVCPNGHRQEPTLAVAAEIPITCPICGAKVEPPSAEELAFNSLGACPTC
QGTGTVREVDDATLVPDDSLTIDQGAVVPWRTFGFNVQPDIVREFGVRTDVPWRNLTDRE
RKIVFEGPAEKKHITITSVKGVHELDFTFRNARLTVTEELKRANDDKRLAKVAKFLTERT
CPDCKGTRLNQRARLPEINGDNLAEVTSWPLDKVLDWGRRLPPTLPEPMRPMALALCKTL
DEMGRRLMQLGLSYLTLDRSSASLSTGERQRAQLARAVRNETTGVLYVLDEPSTGLHPAN
LEGLIGVMRDLLADGNSVVFVDHDVKVLQSADYLIEMGPGAGERGGRILAQGAPERIAAV
PDSRIAGFLDGREPVLVRDRHPMPAENEWIRMQAGSIHTVQPLDLAIPRGCMTAVTGVSG
SGKTTMILESLVPALQARIQGDPMPKHVRSLDPAGIDRVRLVDSSPIGINVRSTVATYSG
LMDRLRRLFAATDQAKKDKLGISAFSYNTGSLRCPQCDGTGQISLDVQFLPDIPITCPSC
HGRRYRPEAEHYRLSTPTHSEPLSLPDLLAMEVGRALEVFAHGREYTAIRRGLQTLKDLG
LDYLTLGEDTPSLSGGEAQRLKLSNELGRRQNGSMFVLDEPTTGLHPLDVRVLIGVLERL
VGKGATVIFIEHDLDMIANADHVVDMGPGGGDRGGRIVAQGDPESVARNPDSVTGRYLAD
HLHLRRP
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagcggagagaccagcaaggaactctccgcaccgcccaaggccatccttgtc
cgcggcgcccgggtccacaacctgcgcaacctggatgtcgacattcctttgaatcacctg
gtgggcatcgccggggtctcgggctccggcaagtcctccctggctctgggggtcctctat
gccgagggctcccggcgctacctggaatccctgtccacctacaccaggaggcggatgacc
caggcccaacgtccccaggtggagtcggtgcgtttcctgccgccggctttagctctgcgc
cagcggccgggagtgggcggcatgcgatccaccttcggcactgccaccgagctgctcaac
gtgctcaggctgatgttctcccggctggccagccatgtctgccccaatggccatcgccag
gagcccaccctggcagtggcggccgagatccccatcacctgcccgatctgcggcgctaaa
gtggagcctcccagcgccgaggaactggccttcaactcactgggagcctgtcctacctgc
caggggaccgggaccgtgcgcgaggtggacgacgccaccctggttcccgatgacagcctg
accatcgaccaaggggccgtggtgccctggcggaccttcggcttcaacgtccagcccgac
atcgtgcgcgagttcggagtccgcaccgacgtaccttggcggaatctgaccgatcgggag
cggaagatcgtcttcgagggcccggctgaaaagaagcacatcaccatcacctcggtcaag
ggggtccatgagctggacttcaccttccggaacgcacggttgaccgtgaccgaggagctc
aagagggccaacgacgacaagcgcctggccaaggtggccaagttcctgaccgaacggacc
tgcccggactgcaagggcacccggctcaaccaacgggcgcgtctgcccgagatcaacggg
gacaatctggccgaggtcacctcctggcccctggataaggtgctggactggggtcggaga
ctgccgcccacattgcccgaacctatgcggcctatggcattggccctctgcaagaccctg
gacgaaatgggcaggcggttgatgcagctgggactgagctacctgaccctggaccgctcc
agcgcatcactatccacaggtgagcggcagcgggcccagctggccagggctgtgcgcaat
gaaaccacaggcgtgctctatgtgctggacgagccttcgaccggcctgcatcctgccaac
ctggaggggctgataggggtcatgcgcgacctgctggccgacggtaactcagtggttttc
gtcgaccacgacgtcaaggttttgcaatcagccgactatctgatcgaaatgggtcccgga
gcaggcgagcgcggcggcaggatcctggcccagggagcccccgagcggattgccgccgtc
cctgactcgcgcattgccgggtttttggatggacgcgagcccgttttggtacgcgatcgg
catcccatgcccgcagagaatgagtggatccgtatgcaggcaggatccattcacacggtc
caaccgctggatttggccattcctcgtggatgcatgacagcagtgaccggcgtatccggt
tccggcaagaccaccatgatcctggagtccctggtccccgccctgcaagcccgtatccag
ggcgatcccatgcccaaacatgtgcgcagcctggacccggccggcatcgaccgggttcgc
ctggtggactcctcgcccatcggcatcaacgtgcgctccacggtggccacctactcgggg
ctgatggaccggttgcgccgtctcttcgcggctactgaccaggcgaaaaaggacaagctg
ggcatctcggcattctcatacaacaccggatccctgcgctgcccccagtgcgacggaaca
ggccagatcagcctggatgtacagttcctgcccgacattccgatcacctgcccgagctgc
catggtcggcggtaccgtccggaggccgagcactaccgtctgtccacgccgacccattcg
gagcctttgagcctgcccgatctgctggccatggaggtgggccgggccttggaggtcttc
gcgcatggccgcgagtacacggccatccgccgaggcctgcagaccctgaaggatctgggc
ctggactacctgaccctgggggaggataccccttcgctttctggcggggaggcccagcgg
ctgaagctgtccaacgaattgggccgcaggcagaacggctccatgttcgtcctggacgag
cccaccacaggcctgcatcccttggatgtgcgtgtcctgattggagtgctggagcgcctg
gtcggcaagggggccacggtgatcttcatcgagcacgatctggacatgatcgccaacgcc
gaccatgtggtcgatatgggcccgggaggcggcgaccggggcggaagaatcgtggcccag
ggcgaccctgaatccgtggcccgcaacccggattcggtgaccggccgctacctggccgac
cacctgcatctgagacgtccctga
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