Bifidobacterium asteroides: BAST_0968
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Entry
BAST_0968 CDS
T02271
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bast
Bifidobacterium asteroides
Pathway
bast03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAST_0968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bast03400
]
BAST_0968
Enzymes [BR:
bast01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAST_0968
DNA repair and recombination proteins [BR:
bast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAST_0968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFU71548
UniProt:
K4IP54
LinkDB
All DBs
Position
complement(1259858..1263478)
Genome browser
AA seq
1206 aa
AA seq
DB search
MVDEHIQSVQETGKKEPQESLNGSLRPLLDNLQADAAFKRLVQGDSEPAADTDTSLMVQA
PQGIRPALAAAAAGRAPVVLVVPSERDAQEMTGAIRSWYEGDPGDVALLRSWETLPHERL
SPRADTVASRMAVFRRLAHPVQGDPDFGPIRILVMPVRSLLQPVVKGLQDVEPLVFLRGQ
DLPLDQAVEALVRNAYTRVDLVMERGQFAVRGGILDVFVPTMAHPVRIEFFGDEVDTIRS
FHASDQRTYGPDLDRIWAPPCRELQLTDQVRARARSLIGSIPNADDMLESIAQAIPVEGM
ESLLPALVDDLVPVGSMLPEGALILLSEPQLLARSAQDLVKTANEFLAASWHVAASGQGS
GAPISFDRASFLDYDEAISSLEYRRGEVWKLTDLSVDPDREGAERLDALAPDQYRGDEDR
AASGIASLLERGDRVVVTAPAQGTLSRLRRAVQTTGITGLEYHRSLAVDGFVDQSAHLAL
LTERDLTGRTSVAAGSKTSNRRRKAIDLDELKPGDYVVHDQHGIGRFLGMRQRSVGVGPS
KGSREYLVLEYAPSKRNAPPDKLFVPADQLDQVSRYIGAEIPRLNKLGGSDWSATKAKAR
KHVHKIAQGLVKLYSARQRTKGFAFSPDTPWQKELEDAFPYQETPDQLTAIDDVKADMEK
PVPMDRLICGDVGFGKTEIAIRAAFKAVQDGKQVVVLVPTTLLVQQHYQTFTERFEGFPV
DVAAMSRFQTAKENQTTTEGLASGAVDVVIGTHKLLNPRIRFKDLGLMIVDEEQRFGVEA
KETLKAMRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQV
TAAIRRELLRGGQIFYIHNRVEDIGKVSAKVQTLVPEAKVGVAHGKMGEKQLDGVIRDFW
HRDIDVLVCTTIVETGLDIPNANTLIVDRADRFGLSQLHQLRGRVGRGRERAYAYFLYDP
SKPMTQTAHDRLATIAQNTALGSGYDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRM
VSEAVEEYKEPGRTEPVTVSIDLPLEASIPVDYIDSDKLRLEAYRKLASARNEQDLRDLH
EELTDRYGRPPAQFDTLFAVARLRAKARSLGIAEIASQGSRVRIRPVTMPDSLQARIARI
YKGSQYRPVTQTLLIPAPFAGSLGSGPMDSAAMTAWVDTLLDDLAWGLPKSSDDGTPAGP
SPVQQN
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggtcgatgagcacattcagtcagtgcaggagactggtaagaaagagccccaggaatcg
ctgaatgggtccctgcgtcctcttctggacaacctgcaggcggatgccgccttcaagagg
ttggtccaaggagactccgagcctgctgccgacaccgacacctcccttatggtccaggct
ccccagggcatcaggccagccctggcagctgccgcagccggacgtgccccggtcgttctg
gtggtcccctccgaacgtgatgcccaggagatgaccggcgccatccgctcctggtatgag
ggcgacccgggtgatgtggccctgctgcgctcctgggagaccctgcctcacgaacggctc
tcgccccgggcagacaccgtggcctcccggatggccgtcttcaggcggctggcccacccg
gtccagggcgaccctgacttcggacccatccgcatcctggtcatgcccgtgcgctccctg
ctgcagccggtggtcaagggtctgcaggatgtggagcccctggtcttcctacgcggccag
gacctgcccttggaccaggcagtcgaagctttggtccgcaacgcctacacccgggtggac
ctggtcatggaacgcggccagttcgccgtccgaggcggcatcctggatgtcttcgtcccc
accatggcccacccggtgcgcattgagttcttcggcgacgaggtggacaccatccgcagc
ttccacgcctcagaccagcgcacctacggccccgacctggaccggatctgggcgccgccc
tgccgcgagttgcagctgaccgaccaggtccgagcccgcgcacgctccctgatcgggagc
atccccaacgccgacgacatgctggaatccatcgcccaggccattccggtggagggcatg
gaatcccttctgcctgccctggtcgacgacctggtgccggtggggtccatgctgcccgag
ggcgctctgattctgctgtcggagccgcaactgctggcccgctccgcccaggacctggtc
aagaccgccaacgagttcctggccgccagttggcatgtagcggcctcaggacagggctcg
ggcgcacccatcagcttcgacagggccagcttcctggactacgacgaggccatctcatct
ttggagtaccgcaggggggaggtctggaagctgaccgacctgtcggtggatccggaccgg
gagggggccgagcgtctggatgccctggccccggaccagtaccgaggcgacgaggatcgg
gccgcctcgggcattgcatccctgctggagcgcggcgaccgggttgtggtgaccgctccg
gcccagggaacgctgagccgtctgcgtcgggccgtgcagaccacggggatcactgggttg
gagtaccaccgctccctggctgtggacggcttcgtggaccagtccgcccatctggccctg
ctgaccgaacgtgacctgacgggccgcaccagtgtggccgccggcagcaagacctccaac
cgccggcgcaaggccatcgacctggacgagctcaagcccggtgactatgtggtccacgac
cagcacggcatcggccgcttcctgggcatgcgccagcgcagcgtgggcgtgggccccagc
aagggcagccgggagtatctggtcctggagtacgccccctccaagcgcaacgcgccgcca
gacaagctcttcgtgccggccgaccagctggatcaggtcagccgctatatcggtgccgag
attcccaggctcaacaagctgggcggatccgactggtcagccaccaaggccaaggcccgc
aagcatgtccacaagattgcccagggcctggtcaagctttactcggcccggcagcgcacc
aagggcttcgccttcagccccgacaccccctggcagaaagagttggaggatgccttccca
taccaggagacccccgaccagctgaccgccatcgacgatgtcaaggccgatatggaaaag
ccggtgcccatggatcgcctgatctgcggggatgtgggcttcggcaagaccgagatagcc
atccgtgccgccttcaaggcggtccaggacggcaagcaggtagtggtcctggtgcccacg
accctgttggtccagcagcactaccagaccttcaccgagcgcttcgagggcttcccggtg
gatgtggccgccatgagccgcttccagaccgcaaaggagaaccagaccactacggagggc
ctggccagcggggccgtggacgtggtcatcggcacccataagctgctcaacccgcgcatc
cgcttcaaggatttgggtctgatgatcgtggacgaggagcagcgcttcggcgtggaggcc
aaggagaccctcaaggccatgcggaccaacgtggacgtcctgtccctgtcggccacgccc
attccgcgcactctggaaatggcggtgaccggcatccgggagatgtcgaccctggccacg
ccacccgaggaccgtcttccggtgctgacctatgtaggtgcctacgaggatgcccaggtg
actgcggccattcgtcgcgagctcctgcgcgggggccagatcttctacatccataaccgg
gtggaggacatcggcaaggtctcggccaaggtgcagaccctggtcccagaggccaaggtg
ggtgtggcccacggcaagatgggggagaagcagttggacggggtcatccgggacttctgg
caccgggacatcgatgtgctggtctgcaccaccatcgtcgagaccggcctggatattccc
aatgccaatacgctgatcgtggaccgggccgaccgcttcgggctctcccagctccatcag
ctgcgcggccgggtgggacgtggccgggagcgcgcctacgcctacttcctctacgacccc
agcaagcccatgacccagaccgcccacgaccggctggccaccatcgcccagaacacggcc
ctgggatccggctacgacgtggccatgaaggacctggagctgcgtggcaccggcaacctg
ctgggtgacgagcagtccggacacatcgagggggtcggcttcgacctttacgtgcgcatg
gtctccgaggctgtggaagagtacaaggaacccgggcggaccgagccggtcaccgtcagc
atcgacctgcccctggaggcctccatcccggtggactacatcgactcggacaagctgcgt
ctggaggcctaccgcaagctggcctcggcccgcaacgagcaggatctgcgcgacctgcac
gaggagctgaccgaccggtatggtcgtccgccggcccagttcgacaccctcttcgcggtg
gccaggctgcgggccaaggctcgctccctgggcatagcggagatcgcctcccagggctcc
agggtgcgcatcaggcccgtgaccatgcccgactccctccaggccaggatcgcacgaata
tacaagggcagccagtaccgcccggtgacgcagaccctgctgattccggcgccattcgcg
ggctccctgggttcgggacccatggattcggcggccatgaccgcctgggtggacaccctg
ctggacgaccttgcctgggggctgcccaagtcctccgacgatggcacgccagcgggtccc
tcgcccgtccaacaaaactag
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