Bdellovibrio bacteriovorus HD100: Bd2252
Help
Entry
Bd2252 CDS
T00159
Symbol
lig
Name
(GenBank) InterPro: ATP-dependent DNA ligase; hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bd2252 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bba03400
]
Bd2252 (lig)
Enzymes [BR:
bba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bd2252 (lig)
DNA repair and recombination proteins [BR:
bba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bd2252 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CAE80083
UniProt:
Q6MKX4
LinkDB
All DBs
Position
complement(2148270..2150492)
Genome browser
AA seq
740 aa
AA seq
DB search
MFVVQEHHASHLHYDFRLEWQGVLKSWAVPKGPSLDPHLKRLAVQVEDHPLEYGTFEGVI
PEKQYGAGPVYIWDTGTWIPKAPVAAGFKKGHLEFELKGKRLKGTWDLIRTRMQGRQVQW
LLVKREDRFARAGYEAPLIGDKSTVRRRVHTRTSFSFVQPMLALLVAEPPRGPQWWHEVK
WDGYRIQAHLQGAKVKLYTRAGHEWSGKMETVVQSLATLNVQSAVLDGEVVVLDRQGRSH
FQKLQNYFDSDPDQELTYVAFDLLMLNGEDLRDQSLKERRRKLQGILKGKHKNLRLSQQL
KLNAASWKKLRRQGLEGVISKKLDSTYISGRKGEWVKSKFLNRQEFVIGGYVPGRGSRSD
FGALLLGVYEKGQFRFVGKVGTGFSQNSITSIKKQLDRIKVAKKPFSAGDPPKSGAVWVR
PELLAEVSFASWTHGMHLRAPVFVQLRKDKPAPEVTSDALLLTNPDKVLFAAEGITKLEV
AEYYIAMVERMRPYFENRLLALVRCPDGSAGKCFFQKHLNAKADTIAVFEKDDALYVKDA
RGLLELVQMGAYEIHSRNSRAEAPGKPDQFVLDLDPGPGVAWGEVVSAALLIKKDLELLG
LRSFVKLSGGKGLHIHVPFRPGPSWEEVKRFTHSLALNWEHRFPDRFVSKMAKKIRVGRI
FIDYLRNSKGSTSVLPYSLRARDRSSVALPVAWTQLKKYKSGDAVTLKRALQILKKGRDP
WANYFARAPVLPVQKARSAS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcgtgcaggaacatcatgcctctcacttgcattatgattttcggctggaatgg
cagggggttttgaaaagctgggcggttccgaaggggcccagtctggatccacacttaaaa
cgtcttgctgtgcaggtggaggatcatcctttggagtacggtacctttgaaggtgtcatt
ccggaaaagcagtacggggccggtcctgtgtatatctgggatacaggaacatggattccg
aaagctccggtcgcggcaggatttaaaaaaggtcatctggagtttgaacttaaaggcaaa
agactgaagggcacctgggatttgattcgcaccagaatgcaggggcggcaggtgcagtgg
cttttggtgaagcgggaagaccgcttcgcccgggcggggtatgaggcgccgctgatcgga
gataaatccaccgtgcggcggcgagttcacaccagaacctcattttcatttgttcagccc
atgttggcattgctggtggctgagccaccccggggaccccaatggtggcacgaggtcaag
tgggacggttatcgcattcaggcccatctgcagggggcgaaggtgaaactgtatacaagg
gccgggcatgagtggtccggtaagatggaaacagtcgttcaaagtctggccactctgaat
gttcagtccgcggtccttgatggtgaggttgtggttttggatcgccaggggcgaagtcac
tttcaaaaactgcaaaactactttgattcggatccggaccaggagctgacatatgtcgct
tttgatttgctgatgctaaacggcgaggacctgcgggatcagtcgttgaaagagcgacgg
aggaagcttcagggaattttaaaaggaaaacacaaaaatcttcgactcagtcagcagctc
aagttgaatgcagcctcgtggaaaaaactgcggcgtcaggggcttgagggagtgatttcg
aaaaagcttgatagcacctacatctccggtcgcaaaggtgagtgggtgaaaagcaagttt
ttaaaccggcaggagttcgttattggcggctatgttccaggtcgcggcagtcgcagtgat
tttggagcgttgcttttgggtgtctatgaaaaaggacagtttcgttttgtgggaaaagtg
gggacgggctttagtcagaacagtataacctcaattaaaaaacagttggatcgtatcaaa
gttgccaaaaaacctttctcggcaggagacccgccgaagtccggtgccgtatgggtgcgg
cccgagttgctggccgaggtttcctttgccagttggactcatggaatgcatttgcgggcg
ccggtgtttgtgcagcttcgcaaagacaagcccgcaccggaagtgacttcggatgccctg
ttgctgaccaatcccgacaaagtgctttttgccgcggaaggaatcaccaagcttgaggtg
gctgaatactatatcgccatggttgagcggatgcggccgtactttgaaaatcgcctgttg
gcattagtgcgctgtccggatggatctgcgggaaagtgtttttttcaaaagcatctcaac
gcgaaggctgacaccattgcggtctttgaaaaagatgatgctttgtatgtgaaagatgcc
cgcgggcttctggaactggtgcagatgggggcctacgaaattcacagtcgaaacagcaga
gcagaggctccgggaaagcctgaccagtttgtgttggatttggatccggggcctggtgtg
gcctggggtgaggtggtttcagcggccctcttgataaagaaagatctggagttgttgggg
cttcgcagctttgtgaagctgagcggaggcaaggggttgcatattcatgtcccgttccgt
ccgggcccttcgtgggaggaagtgaagcgcttcacgcacagcctggcattgaattgggag
catcgttttccggatcggtttgtcagcaagatggcaaagaagattcgtgtcggacggatt
tttattgattaccttcgcaattccaagggctcgaccagtgttttgccctattcattgcgc
gcgcgcgacagaagctcggtggctttgccggtggcttggactcagttgaaaaaatataaa
agtggcgatgcggtcaccctgaagagggcattgcagattctgaagaaggggcgggacccg
tgggcgaactatttcgcccgggccccggttctgccagtgcagaaggctagaagtgcttct
taa
DBGET
integrated database retrieval system
