Bdellovibrio bacteriovorus 109J: EP01_07520
Help
Entry
EP01_07520 CDS
T03079
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EP01_07520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbac03400
]
EP01_07520
Enzymes [BR:
bbac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EP01_07520
DNA repair and recombination proteins [BR:
bbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EP01_07520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AHZ84787
LinkDB
All DBs
Position
complement(1545420..1547744)
Genome browser
AA seq
774 aa
AA seq
DB search
MPLKEYHRKRDFKKTREPPARKTKKPLKAAKEHLMFVVQEHHASHLHYDFRLEWQGVLKS
WAVPKGPSLDPHLKRLAVQVEDHPLEYGTFEGVIPEKQYGAGPVYIWDTGTWIPKAPVAA
GFKKGHLEFELKGKRLKGTWDLIRTRMQGRQVQWLLVKREDRFARAGYEAPLIGDKSTVR
RRVRTRTSFSFVQPMLALLVAEPPRGPQWWHEVKWDGYRIQAHLQGAKVKLYTRAGHEWS
GKMETVVQSLATLNVQSAVLDGEVVVLDRQGRSHFQKLQNYFDSDPDQELTYVAFDLLML
NGEDLRDQSLKERRRKLQGILKGKHKNLRLSQQLKLNAASWKKLRRQGLEGVISKKLDST
YISGRKGEWVKSKFLNRQEFVIGGYVPGRGSRSDFGALLLGVYEKGQFRFVGKVGTGFSQ
NSITSIKKQLDRIKVAKKPFSAGDPPKSGAVWVRPELLAEVSFASWTHGMHLRAPVFVQL
RKDKPAPEVTSDALLLTNPDKVLFAAEGITKLEVAEYYIAMVERMRPYFENRLLALVRCP
DGSAGKCFFQKHLNAKADTIAVFEKDDALYVKDARGLLELVQMGAYEIHSRNSRAEAPGK
PDQFVLDLDPGPGVAWGEVVSAALLIKKDLELLGLRSFVKLSGGKGLHIHVPFRPGPSWE
EVKRFTHSLALNWEHRFPDRFVSKMAKKIRVGRIFIDYLRNSKGSTSVLPYSLRARDRSS
VALPVAWNQLKKYKSGDAVTLKRALQILKKGRDPWANYFARAPVLPVQKARSAS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgccactgaaggaatatcaccgcaagcgagattttaaaaagactcgggagccgccggcc
cggaaaacgaaaaagccgttaaaggcggcaaaagagcatttgatgtttgtcgtgcaggaa
catcatgcctctcacttgcattatgattttcggctggaatggcagggggttttgaaaagc
tgggcggttccgaaggggcccagtctggatccacacttaaaacgtcttgctgtgcaggtg
gaggatcatcctttggagtacggtacctttgaaggtgtcattccggaaaagcagtacggg
gccggtcctgtgtatatctgggatacaggaacatggattccgaaagctccggtcgcggca
ggatttaaaaaaggtcatctggagtttgaacttaaaggcaaaagactgaagggcacctgg
gatttgattcgcaccagaatgcaggggcggcaggtgcagtggcttttggtgaagcgggaa
gaccgcttcgcccgggcggggtatgaggcgccgctgatcggagataaatccaccgtgcgg
cggcgagttcgcaccagaacctcattttcatttgttcagcccatgttggcattgctggtg
gctgagccaccccggggaccccaatggtggcacgaggtcaagtgggacggttatcgcatt
caggcccatctgcagggggcgaaggtgaaactgtatacaagggccgggcatgagtggtcc
ggtaagatggaaacagtcgttcaaagtctggccactctgaatgttcagtccgcggtcctt
gatggtgaggttgtggttttggatcgccaggggcgaagtcactttcaaaaactgcaaaac
tactttgattcggatccggaccaggagctgacatatgtcgcttttgatttgctgatgcta
aacggcgaggacctgcgggatcagtcgttgaaagagcggcggaggaagcttcagggaatt
ttaaaaggaaaacacaaaaatcttcgactcagtcagcagctcaagttgaatgcagcctcg
tggaaaaaactgcggcgtcaggggcttgagggagtgatttcgaaaaagctggatagcacc
tacatctccggtcgcaaaggtgagtgggtgaaaagcaagtttttaaaccggcaggagttc
gttattggcggctatgttccaggtcgcggcagtcgcagtgattttggagcgttgcttttg
ggtgtctatgaaaaaggacagtttcgttttgtgggaaaagtggggacgggctttagtcag
aacagtataacctcaattaaaaaacagttggatcgtatcaaagttgccaaaaaacctttc
tcggcaggagacccaccgaagtccggtgccgtctgggtgcggcccgagttgctggccgag
gtttcctttgccagttggactcatggaatgcatttgcgggcgccggtgtttgtgcagctt
cgcaaagacaagcccgcaccggaagtgacttcggatgccctgttgctgaccaatcccgac
aaagtgctttttgccgcggaaggaatcaccaagcttgaggtggctgaatactatatcgcc
atggttgagcgtatgcggccgtactttgaaaatcgcctgttggcattagtgcgctgtccg
gatggctcagcgggaaagtgtttttttcaaaagcatctcaacgcgaaggcagacaccatt
gcggtctttgaaaaagatgatgctttgtatgtgaaagatgcccgcgggcttctggaactg
gtgcagatgggggcctacgaaattcacagtcgaaacagcagagcagaggctccgggaaag
cctgaccagtttgtgttggatttggatccggggcctggtgtggcctggggtgaggtggtt
tcagcggccctcttgataaagaaagatctggagttgttggggcttcgcagctttgtgaag
ctgagcggaggcaaggggttgcatattcatgtcccgttccgtccgggcccttcgtgggag
gaagtgaagcgcttcacgcacagcctggcattgaattgggagcatcgttttccggatcgg
tttgtcagcaagatggcaaagaagattcgtgtcggacggatttttattgattaccttcgc
aattccaagggctcgaccagtgttttgccctattcattgcgcgcgcgcgacagaagctcg
gtggctttgccggtggcttggaatcagttgaaaaaatataaaagtggcgatgcggtcacc
ctgaagagggcattgcagattctgaagaaggggcgggacccgtgggcgaactatttcgcc
cgggccccggttctgccagtgcagaaggctagaagtgcttcttaa
DBGET
integrated database retrieval system