Bradyrhizobium barranii subsp. barranii: J4G43_041680
Help
Entry
J4G43_041680 CDS
T08665
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bban
Bradyrhizobium barranii subsp. barranii
Pathway
bban03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bban00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J4G43_041680 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bban03400
]
J4G43_041680 (ligD)
Enzymes [BR:
bban01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J4G43_041680 (ligD)
DNA repair and recombination proteins [BR:
bban03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J4G43_041680 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UEM11049
UniProt:
A0A939MD94
LinkDB
All DBs
Position
complement(8506155..8508821)
Genome browser
AA seq
888 aa
AA seq
DB search
MLRKLSTYRQKRDFEKTPEPSGKTAVAPSTQRRFVMQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPDGQYGGGTVMLWDRGTWESEDPERGFQ
KGDLKFTLHGDKLHGSWVLVRMRHDRTGGKRTNWLLIKHRDEYASESDDILGEDKSVASG
RAMAEIADGKGRAPKPFMLAKGAKAKADAVWQSNRAEEPKGRTVRPAPGAALKRGTGAKK
KATTATSAKRVSEMPDFVAPQLCTPVERPPAADGWCHEIKFDGYRVQLRVEDGEATLKTR
KGLDWTDKFAAIAKEAGELPDAMIDGEIVALDHNGAPNFSSLQPALSDGKTEDLVFFAFD
LLFAEGLDCRRLPLGERKDRLRQVLDTGKRKSSQIRYVEHFESSGDAVLQSACKLELEGV
VSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLAFVGMVG
TGFGADTVKRIMPSLKAMEARQSPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPADTELAKPSARKRAVPKAGKRKDAGTAEVMGVVISKPDK
ELWPDGGDGAGVTKLDLALYFEAVGAWMIEHIKGRPCSILRAPDGIGGEKFFQRHAMQGT
SNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDMPGRLVFDLDPAP
DVEFADVVDAAKEMRRRLTDVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQG
VCQWMADDDPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWA
QVKGDLDPKRYTVRTVPGLLARSKAWDGYDEAASSIKTAMKKLAEKKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgaaaactctccacctaccgacagaaacgcgatttcgagaagacaccggagccg
tcgggcaagaccgcggtggcgccctcgacgcagcggcgcttcgtgatgcagaagcacgat
gcgacgcgactgcactatgatctgcggctcgagttcgacggcgtgttcaagtcgtgggcg
gtcaccaagggaccctcgctcgatccgcatgacaagcggctggcggtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggcacgattccggacgggcagtatggcggcggc
acggtcatgctctgggaccgcggcacctgggagtccgaggatcccgagcgcggcttccag
aagggtgatctcaagttcacgctccacggcgacaagctgcatggaagctgggtgctggtg
cggatgaggcatgaccgcaccggcggcaagcgcaccaactggctcctgatcaagcatcgc
gacgaatatgccagcgagagcgacgacattctcggcgaggacaagtcggtggcctccggc
cgcgcgatggcagagatcgccgatggcaagggtcgcgcgccaaaaccgttcatgctggcg
aagggtgccaaggccaaggccgatgcggtctggcagtccaatcgtgccgaggagccgaaa
gggcgcaccgtcaggccggcgcccggcgcggcgttgaagcgcgggacgggcgcaaagaag
aaagcgacgaccgcgacaagcgcgaaaagagtctcggagatgccggacttcgtcgcgccc
cagctctgcaccccggtcgagcggccgccggcggccgatggctggtgccacgagatcaag
ttcgacggctatcgcgtccagctccgcgtcgaggacggcgaggcgacgctgaagacgcgc
aagggcctcgactggaccgacaagttcgcagccatcgcgaaggaggcgggcgagcttccc
gacgccatgattgacggcgagatcgtcgcgctggatcacaacggcgcgccgaatttctcc
tcgctccagcccgcgctatcggacggcaagaccgaggacctggtcttcttcgccttcgac
ctcctgttcgccgaagggctcgattgccggcgcctgccactcggcgagcgcaaggaccgc
ctcaggcaagtcctggacacaggcaagaggaaatcgagccaaatccgctatgtcgagcat
ttcgagagcagcggcgatgccgtgctgcaatcggcctgcaagctcgagctcgaaggcgtg
gtgtcgaagaagctcgatgcgccttaccggtcggggcgaacggaaagctggaccaaggcc
aaatgccgcgccggccatgaggtcgtgatcggcggctggaagaccaccaacggcaaattc
cgctcgctgatggccggcgtgcaccgcggcgatcatcttgccttcgtcggcatggttggc
accggcttcggcgcggacacggtcaagcgcatcatgccgtccttgaaggccatggaggcc
aggcaaagccccttcggcggcaagaacgcgccgaaaaagacgcgcgacgtgcactggctg
aagccggagctcgtcgccgagatcgagttcgccggcttcaccgccgacggcaatatccgg
caggccgccttcaagggtctgcggcaggacaagccggccgaggaggtcgaggcggaaaca
cccgctgataccgaactcgcaaagccctcggccaggaagcgtgccgtgccgaaggcaggc
aagcgcaaggatgccggcacggccgaggtgatgggtgtcgtcatctcaaagccggacaag
gagctgtggccggatggcggcgacggcgcgggcgtgacgaagctcgatctcgcgctctat
ttcgaggccgtcggcgcctggatgatcgagcacatcaagggccggccctgttcgatcctg
cgcgcgcctgacggtatcggcggcgaaaagttcttccagcgccatgccatgcagggcacc
tcgaacctgctggagctcgcgaaagtctcgggcgatcgcaagccgtacctgcagatcgat
cgcgtcgaggggctcgccgcggtcgcgcaaatcggcggcgtcgagctgcatccctggaat
tgcgcgccggacgcctacgatatgccgggccggctggtgttcgatctcgatcccgcgccg
gacgtcgaatttgccgatgtcgtggacgccgccaaggagatgcggcggcgcctcaccgac
gtcggcatggagagcttttgcaagaccaccggcggcaagggcctgcacgtggtggtgccg
ctgctccacggcgcgcgcgacaaggtgagctggaaggaggccaaggcgttcgcgcaaggc
gtttgccagtggatggccgacgatgatcccgagcgctatctgctcaacatgtcgaagaag
ctgcgcaacggaaagatcttcctggattatttgcgcaatgaccgcctgtcgacggcggta
gctccgctgtcaccccgtgcgcgcgatggcgcgaccgtgtcgatgcccgtgacatgggcg
caggtgaagggtgatctcgatccgaagcgatacacggtgcggacggtgccgggtctgctg
gcgcgctcgaaagcctgggatggctatgacgaggcggcttcgtcaataaagaccgcgatg
aagaagctcgcggagaagaagaagtag
DBGET
integrated database retrieval system