KEGG   Bradyrhizobium barranii subsp. barranii: J4G43_041680
Entry
J4G43_041680      CDS       T08665                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bban  Bradyrhizobium barranii subsp. barranii
Pathway
bban03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bban00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J4G43_041680 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bban03400]
    J4G43_041680 (ligD)
Enzymes [BR:bban01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J4G43_041680 (ligD)
DNA repair and recombination proteins [BR:bban03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J4G43_041680 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: UEM11049
UniProt: A0A939MD94
LinkDB
Position
complement(8506155..8508821)
AA seq 888 aa
MLRKLSTYRQKRDFEKTPEPSGKTAVAPSTQRRFVMQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPDGQYGGGTVMLWDRGTWESEDPERGFQ
KGDLKFTLHGDKLHGSWVLVRMRHDRTGGKRTNWLLIKHRDEYASESDDILGEDKSVASG
RAMAEIADGKGRAPKPFMLAKGAKAKADAVWQSNRAEEPKGRTVRPAPGAALKRGTGAKK
KATTATSAKRVSEMPDFVAPQLCTPVERPPAADGWCHEIKFDGYRVQLRVEDGEATLKTR
KGLDWTDKFAAIAKEAGELPDAMIDGEIVALDHNGAPNFSSLQPALSDGKTEDLVFFAFD
LLFAEGLDCRRLPLGERKDRLRQVLDTGKRKSSQIRYVEHFESSGDAVLQSACKLELEGV
VSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLAFVGMVG
TGFGADTVKRIMPSLKAMEARQSPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPADTELAKPSARKRAVPKAGKRKDAGTAEVMGVVISKPDK
ELWPDGGDGAGVTKLDLALYFEAVGAWMIEHIKGRPCSILRAPDGIGGEKFFQRHAMQGT
SNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDMPGRLVFDLDPAP
DVEFADVVDAAKEMRRRLTDVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQG
VCQWMADDDPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWA
QVKGDLDPKRYTVRTVPGLLARSKAWDGYDEAASSIKTAMKKLAEKKK
NT seq 2667 nt   +upstreamnt  +downstreamnt
gtgctgcgaaaactctccacctaccgacagaaacgcgatttcgagaagacaccggagccg
tcgggcaagaccgcggtggcgccctcgacgcagcggcgcttcgtgatgcagaagcacgat
gcgacgcgactgcactatgatctgcggctcgagttcgacggcgtgttcaagtcgtgggcg
gtcaccaagggaccctcgctcgatccgcatgacaagcggctggcggtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggcacgattccggacgggcagtatggcggcggc
acggtcatgctctgggaccgcggcacctgggagtccgaggatcccgagcgcggcttccag
aagggtgatctcaagttcacgctccacggcgacaagctgcatggaagctgggtgctggtg
cggatgaggcatgaccgcaccggcggcaagcgcaccaactggctcctgatcaagcatcgc
gacgaatatgccagcgagagcgacgacattctcggcgaggacaagtcggtggcctccggc
cgcgcgatggcagagatcgccgatggcaagggtcgcgcgccaaaaccgttcatgctggcg
aagggtgccaaggccaaggccgatgcggtctggcagtccaatcgtgccgaggagccgaaa
gggcgcaccgtcaggccggcgcccggcgcggcgttgaagcgcgggacgggcgcaaagaag
aaagcgacgaccgcgacaagcgcgaaaagagtctcggagatgccggacttcgtcgcgccc
cagctctgcaccccggtcgagcggccgccggcggccgatggctggtgccacgagatcaag
ttcgacggctatcgcgtccagctccgcgtcgaggacggcgaggcgacgctgaagacgcgc
aagggcctcgactggaccgacaagttcgcagccatcgcgaaggaggcgggcgagcttccc
gacgccatgattgacggcgagatcgtcgcgctggatcacaacggcgcgccgaatttctcc
tcgctccagcccgcgctatcggacggcaagaccgaggacctggtcttcttcgccttcgac
ctcctgttcgccgaagggctcgattgccggcgcctgccactcggcgagcgcaaggaccgc
ctcaggcaagtcctggacacaggcaagaggaaatcgagccaaatccgctatgtcgagcat
ttcgagagcagcggcgatgccgtgctgcaatcggcctgcaagctcgagctcgaaggcgtg
gtgtcgaagaagctcgatgcgccttaccggtcggggcgaacggaaagctggaccaaggcc
aaatgccgcgccggccatgaggtcgtgatcggcggctggaagaccaccaacggcaaattc
cgctcgctgatggccggcgtgcaccgcggcgatcatcttgccttcgtcggcatggttggc
accggcttcggcgcggacacggtcaagcgcatcatgccgtccttgaaggccatggaggcc
aggcaaagccccttcggcggcaagaacgcgccgaaaaagacgcgcgacgtgcactggctg
aagccggagctcgtcgccgagatcgagttcgccggcttcaccgccgacggcaatatccgg
caggccgccttcaagggtctgcggcaggacaagccggccgaggaggtcgaggcggaaaca
cccgctgataccgaactcgcaaagccctcggccaggaagcgtgccgtgccgaaggcaggc
aagcgcaaggatgccggcacggccgaggtgatgggtgtcgtcatctcaaagccggacaag
gagctgtggccggatggcggcgacggcgcgggcgtgacgaagctcgatctcgcgctctat
ttcgaggccgtcggcgcctggatgatcgagcacatcaagggccggccctgttcgatcctg
cgcgcgcctgacggtatcggcggcgaaaagttcttccagcgccatgccatgcagggcacc
tcgaacctgctggagctcgcgaaagtctcgggcgatcgcaagccgtacctgcagatcgat
cgcgtcgaggggctcgccgcggtcgcgcaaatcggcggcgtcgagctgcatccctggaat
tgcgcgccggacgcctacgatatgccgggccggctggtgttcgatctcgatcccgcgccg
gacgtcgaatttgccgatgtcgtggacgccgccaaggagatgcggcggcgcctcaccgac
gtcggcatggagagcttttgcaagaccaccggcggcaagggcctgcacgtggtggtgccg
ctgctccacggcgcgcgcgacaaggtgagctggaaggaggccaaggcgttcgcgcaaggc
gtttgccagtggatggccgacgatgatcccgagcgctatctgctcaacatgtcgaagaag
ctgcgcaacggaaagatcttcctggattatttgcgcaatgaccgcctgtcgacggcggta
gctccgctgtcaccccgtgcgcgcgatggcgcgaccgtgtcgatgcccgtgacatgggcg
caggtgaagggtgatctcgatccgaagcgatacacggtgcggacggtgccgggtctgctg
gcgcgctcgaaagcctgggatggctatgacgaggcggcttcgtcaataaagaccgcgatg
aagaagctcgcggagaagaagaagtag

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