Bifidobacterium animalis subsp. lactis BB-12: BIF_01169
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Entry
BIF_01169 CDS
T01840
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbb
Bifidobacterium animalis subsp. lactis BB-12
Pathway
bbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BIF_01169 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbb03400
]
BIF_01169 (mfd)
Enzymes [BR:
bbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIF_01169 (mfd)
DNA repair and recombination proteins [BR:
bbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BIF_01169 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Nuc_rec_co-act
AroM
Motif
Other DBs
NCBI-ProteinID:
ADC86036
LinkDB
All DBs
Position
complement(1166075..1169659)
Genome browser
AA seq
1194 aa
AA seq
DB search
MPDDKARHSNANRSAEETYNELMNGSLLSLRQRLLEDQAFAGLVEGHVDAGEDADPSILV
GAPNGIRPALAAASADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHE
RLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ
GEEITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPVRIEFFGDEIDTI
RRFHSSDQRTYGEPIRSVWATPCRELQLTEGIRERAQSLIGQIPNADDLLESIANAIPQE
GMESLIPALVDDLEPVSSMLPRDCIVMLFDPERLRRAVDDLMKTANEFLATSWHVAASGH
GAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFTVDQSLPGHVQIDAVAPQDLHGSG
EKAEDHLGELIRKDYAVVITAAAQGTLSRLKRMLNEIGVVHFDTIRSQAQDGFIDHASKT
ALLTERDLTGRTSVAAGVKTARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSG
KNQATREYLVIEYAPSKRNAPPDKLFIPTDQLDQVSKYIGAEIPKLNKLGGSDWAQTKAK
AKKHVHEIAQNLIRLYSARQRAKGFAFSKDTPWQKELEDAFPYQETADQLTTIDDVKADM
EKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFEGF
PVNVRAMSRFQSTKEINETIKGLADGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGV
EAKETLKAVRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDA
QVTAAIRRELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRD
FWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLY
DPSKPMTEQSHERLVTIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYV
RMVSEAIEDYKDPERTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKDLNE
LRDELTDRYGKPPKVFESLFDVARLREKARALGISEIIGQGRKLRISKIDPAESVQLRIS
RIYPGAQYRPMLNAYTIPTPFEGSMGSGPMESDEVLRWTEQLLDDLAWSAKPVK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatgacaaggcaaggcacagcaatgcgaaccgatcggcggaggagacctacaac
gagctgatgaacggttcgctcctctccctcaggcagcgtcttttggaggatcaggcattc
gccggtttggtggaaggccatgtggatgcgggcgaggacgccgacccgagcatcctcgtc
ggagctcccaacggcattcgtccagcactggccgccgccagtgcggaccgtaagccagtg
gtcatcgtcgtcccctccggtcgcgaggcggaggatctcgtcggcgatctgcgatcgtgg
tatgacggcgatccgaatgaggtggcacagctgatggcatgggagacgctgccccacgag
aggcttagcccacgcgccgacacggtggcgaaccgcatggagacgttctaccggttgtgc
cacccgcagtccgacagcgagatgttcggcccgatacgcattctggtcatgccggtgcgt
tcgctcatccagccggtggtggctggcataggtgacgtgaagccgctcgttttcgcgcaa
ggtgaggaaatcacccttgaagatgccgtgcagggcctcgtccgcaattcctatacgcgc
gtcgatctggtgatggaccgtggcgagttcgcggtgcgtggcggcatcatcgacgtgttt
gttcccaccgaaccgcatccggtgcgcatcgagttcttcggtgacgagatcgacacgatc
cgccgcttccattcctccgaccagcgcacctatggtgaaccgatcaggtcggtgtgggcc
acaccatgccgtgagctgcaactgaccgagggcatacgagagcgtgcgcaatcgttgatc
gggcagattccgaatgccgacgatcttctggaatcgatagccaacgcaatcccgcaggag
ggcatggagtctctcatcccggcattggtggacgacctcgaaccagtttcgagcatgctg
ccgagggattgcatcgtaatgctgttcgacccggaacggctgcgtcgtgcagtggatgac
ctgatgaagacggcgaacgagttcctcgccaccagctggcatgtggccgcatcgggacat
ggcgcgggtgcgccgatctccttcgaagccgcgaacttccttgatcttgatgaggtggtg
ggccagctcacctactctaaccatgagctatggaaggtgagcgggttcactgtggaccag
tcactaccggggcacgtgcagatcgatgcggtggcgccacaggatctccacggcagtggc
gagaaggccgaagaccatctcggcgagctcattcgcaaggattacgcggtcgttatcaca
gccgcggcacagggcacgctgagccgcctcaagcgcatgctcaatgagatcggcgtcgtg
catttcgacacgattcgttcgcaggcgcaagacggttttatcgaccacgcgtcgaagacc
gcgttgctcaccgagcgcgacctcaccggccgcaccagtgtcgccgcaggggtcaagacg
gcacggaaacgacgcaaatccattgatcttatggaattgaaaccgggcgatttcgtggtg
cacgaacagcacggcatcggtcggttcatcgagatgcgccaacgcacaaccggctcgggc
aagaaccaggccacccgcgagtacttggtcatcgaatacgcgccgagcaagcgcaatgcg
ccgccggacaagctgttcatacccaccgaccagctcgatcaggtgagcaagtacatcggt
gctgagattcccaagctcaacaagctcggcgggtcggattgggcgcagaccaaggcgaag
gcgaagaagcatgtgcatgagatcgcgcagaacctcattcgcctgtattccgcgcgtcaa
cgtgccaagggattcgcgttcagcaaggacaccccgtggcagaaggagctcgaggacgcc
ttcccataccaggagacggcggaccagctcaccacgatcgacgacgtcaaggccgatatg
gagaaaccgattcccatggaccgtctcatctgcggagacgtaggcttcggcaagaccgag
atcgcgatccgcgccgcgttcaaggcggtgcaggattccaagcaggtggctgtgctcgtg
ccgacgaccctgctcgtgcagcagcatctgcagaccttcaccgaacgttttgagggcttc
ccggtgaatgtacgcgccatgagccgattccaaagcacgaaggagatcaatgagacgatc
aagggtcttgccgacggcaccgtcgatgtggtgataggcacccataagctgctgaatccg
aagatcaagttcaaggacctgggccttgtgatcatcgacgaggagcagcgttttggtgtt
gaggcgaaggagacgctcaaggccgtacgtacgaatgtcgatgtactgagcctgtcggcc
acgccgattccacgcacgttggagatggctgtcacgggcattcgcgagatgtccacgctg
gcgactccgcccgaggaccgcctgcccgtgctcacctatgtgggcgcctatgaggacgcg
caggtcaccgcggcgattcgacgtgaactgttgcgcggcggtcaggtgttctacatccac
aaccgtgtcgagggcatagaggagaaggccaagcgtctgcaggacctcgttcccgaagcc
cggataggcattgcccatggcaagatgggacgtaagcagctcgaccagatcatccgcgat
ttctggcatcgtgacatcgatgtgctgctgtgcacgacgattgtcgagacgggtctggat
atctcgaatgcgaacacgctgattgtggatcgtgccgaccgattcggcctctcccaattg
caccagctccgtggacgtgtcggccgaggccgtgatcgtgcctatgcctatttcctgtac
gatccgagcaagccgatgaccgagcagtcccacgaacgcctggtcaccattgcgcagaac
accgcattggggtccggcttcgacgtggccatgaaggatctcgagttgcgcggcaccggc
aacctgctgggcgatgagcagagcggacacatcgaaggcgtgggcttcgacctctatgtg
cgtatggtgagcgaggcgatcgaggattacaaggatccggaacgcacggaaccggttgcg
gtcaccatcgacctgccgatcgaggcatcgatacccgtggactacatcggttccgacaag
ctgcggctggaggtctaccgcaaactggccggtgcccgcagcgagaaggatctgaacgag
ttgcgcgacgaactgaccgaccgctacggcaagccgccaaaggtgttcgaatcattgttc
gacgtggcgcgtcttcgtgaaaaggcacgcgcgcttggcatcagcgagatcatcggccag
ggcaggaagctgcgcatctcgaagatcgaccctgccgaatcggtgcagctgcgcatctcg
cgcatctacccaggtgcccaataccggcccatgttgaacgcgtacaccatacccacgccg
ttcgaaggttcgatgggttccggtccgatggaatcggatgaggtgctgcgttggaccgag
cagctcctcgacgatctagcgtggtctgcaaagcctgtgaagtag
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