Branchiostoma belcheri (Belcher's lancelet): 109463046
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Entry
109463046 CDS
T07532
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbel
Branchiostoma belcheri (Belcher's lancelet)
Pathway
bbel03013
Nucleocytoplasmic transport
bbel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109463046
03015 mRNA surveillance pathway
109463046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbel03019
]
109463046
Enzymes [BR:
bbel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109463046
5.6.2.5 RNA 5'-3' helicase
109463046
Messenger RNA biogenesis [BR:
bbel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109463046
mRNA cycle factors
Common to processing body (P body) and stress granule
109463046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
Viral_helicase1
DEAD
Helicase_RecD
nSTAND3
AAA_16
ATPase
SRP54
AAA_22
PhoH
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
109463046
NCBI-ProteinID:
XP_019615297
UniProt:
A0A6P4Y915
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MSSVEAYGPSSQSLTFLETEENDLLMGADTQGTEFDFTDFTLPSQTQTQSQASQLEHQNL
HSQVNGQDASLQNGLDDGIGAATQAMGELNFEEEEEEDTYYTKDLPNHACKFCGIHDPNC
VVMCGMCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGALGETVLECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATQSNLKDMNWDQTQWQPLIQDRCFLPWLVKVPSEHEQLR
ARQITAQQINKLEEIWKENPNATLEDLEKPGVDEEPQAVLLRYEDAYQYQNILGPLVKLE
ADYDRKLKESQTHSNITVRWDLGLNKKRLAYFTMPKTDSDMRLMPGDELRIRYEGELGPK
WKEVGHVVKVPDNYTEDVCIELRSNAGAPVDLTHNFAIDFVWKSTSFDRMQAAMKTFAVD
ETSVSGYIYHKLLGHEVEDVVMKTQLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSASIVYHLAKQNNGQILVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAID
SPVSFLALHNQIRNMESLPELQKLQQLKDETGELSSADEKRYRTLKRNAERELLQHADVI
CCTCVGAGDPRLQKFQFRTVLVDESTQATEPECMVPIILGCKQLILVGDHCQLGPVVMCK
KAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERTKK
GLDFPWPQPDKPMFFYATSGQEEIASSGTSYLNRTEASNVEKITTKFLRAGVKPDQIGII
TPYEGQRAFVVQYMQFGGQLHTKLYMEVEVASVDAFQGREKDFIILSCVRANEHQGIGFL
NDPRRLNVALTRARYGIIIVGNPKVLSKQPLWNNLLVDYKEQKVLVEGPLNNLKESMVQF
SKPRKLVNPTNPGGRFMSTTMWDAREALIPGGAYDRSGAFNGGPGYGSNDYYRPHDQMSM
ISSEHSQAAGMALPIPVGMFMPPAHPPGPYYGQGVPGRPPVSRGPNRKGGRGQRQQKNTY
NSYNSMQSQSSQDASQPFSQGPLTQGHLSMSQPSQMGQSGLSQPGLSQPELSQDSYLGDE
FKSQADAVLSQDSTYQGDRAYQHAGFSQY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgtcgaggcgtatggacccagttctcagtcgctaactttcctagaaaccgag
gagaacgatctgcttatgggagcggacacgcaagggaccgagttcgacttcacggacttc
accctcccctcccagactcagacgcagagtcaggcaagtcagctggagcaccagaatctt
cacagtcaggtgaatggacaagacgcctccctgcagaatggtctggacgatgggatcgga
gctgccacacaggccatgggagaactcaactttgaggaagaagaagaggaggacacttac
tacaccaaggacctgccaaatcatgcctgcaagttttgtggtatccacgaccccaactgt
gtggtgatgtgtgggatgtgcaagaaatggttctgtaacggccgtggaaacacatctggc
agccacatcatcaaccacctggtgagggccaagcacaaagaggtgaccctgcacaaggac
ggtgccctgggagagacggtgctggagtgttacaactgtggctgtcggaacgtcttcctg
ctgggcttcatccccgccaaggctgactcagtcgtggtgcttctgtgtcggcaaccatgt
gcgacccagtccaacctgaaggacatgaactgggaccagacccagtggcagcccctgatc
caggaccgctgcttcctgccctggctggtcaaggtgccgtcggagcacgagcagctgcgg
gctcgccagatcacggcacagcagatcaacaagctggaggagatctggaaggaaaaccct
aatgccaccctggaggacctggagaagcccggcgtagatgaggagccccaggccgtgctt
ctgcgatacgaggacgcctaccagtaccagaacatcctgggccctctggtcaagctggag
gctgactacgacaggaaactgaaggagtctcagacccactccaacataacagtccgctgg
gacctgggtctgaacaagaagcggctggcgtacttcaccatgcccaagactgacagtgac
atgcggctcatgcctggagacgaactccgcatcaggtatgaaggagagctggggccgaag
tggaaggaggttggacatgtcgtcaaggttccagataactacacagaagatgtgtgtatc
gagctgcgcagcaatgctggagcacctgttgatctgacccacaactttgccatcgacttt
gtctggaagtcaacctcctttgacagaatgcaggctgccatgaagacatttgcagtagat
gagacgtcagtgtcagggtacatctaccacaagctgcttggtcatgaggtggaggatgtg
gtgatgaaaactcagctgcccaaacgtttctcagctccagggctgcctgagctcaaccat
tcacaagtctacgctgtcaaaactgtcttacagaggcctcttagcctcattcagggtccc
cctggtacagggaagacagtgacgtcagcctccatcgtgtaccacctggccaagcagaac
aacggccagatcctggtctgtgcgcccagcaacatcgccgtggaccagctgaccgagaag
atccacaggacggggttaaaggtcgtgcgtctgtgtgccaagagcagagaggcgatcgac
tccccagtgtcattcctcgcactccacaaccagatccgcaacatggagagcctacctgaa
ctgcagaagctgcagcagctgaaggatgagactggggagctttcatcagctgacgagaaa
cggtaccggacactcaagcgtaatgcagaacgtgaactcctacagcatgcagacgtgatc
tgctgcacctgtgtgggagcaggcgacccccgtctgcagaagttccagttccgcacagtc
ctggtggatgagagcacccaggccacggagccggagtgcatggtgcccatcatcctgggc
tgcaagcagctgatcctagtaggagatcactgccagctgggccctgtggtgatgtgtaaa
aaggcggcgcgggccggactgtcgcagtccctgtttgaacggctagtcgtcctgggcatc
cgaccaatcaggctgcaggtgcagtaccgtatgcaccctgctctcagcgccttcccatcc
aacattttctacgaagggtcactgcagaatggggtgactgctgctgaacgcaccaagaaa
gggttagacttcccctggccacagcctgataagcccatgttcttctatgccaccagcgga
caagaggaaatcgccagctcaggaacatcctacctcaacaggactgaggcctccaatgtg
gaaaagatcaccaccaagttcctacgggcaggggttaagccagaccagatcggcatcatc
acaccgtacgagggtcaaagggcatttgtggtgcaatacatgcagtttggcgggcagctg
cataccaagttgtacatggaagtggaggtggcgagtgtggatgcattccagggacgagag
aaggacttcatcatcctgtcctgtgtgagagccaacgagcaccagggcatcggcttcctg
aacgaccctcgccgactcaacgtcgccctgacgagagccaggtatggcatcatcattgtt
gggaacccaaaagtcttgtccaagcaacctctgtggaataacctgctggtggattacaag
gaacagaaggtgctggtagaaggccccctgaacaacttgaaggagagcatggttcagttc
agcaagccccgtaagctggtgaacccgaccaacccgggagggcgtttcatgtccaccacc
atgtgggacgctcgggaagctctcatccctgggggggcatacgacaggtcaggggcattc
aatggaggcccagggtatggcagtaatgactactaccgcccacacgaccagatgagtatg
atcagcagtgaacactcgcaggcagcaggcatggctctacccatccctgtggggatgttc
atgcctccagctcacccgcctggaccttactatgggcagggtgtcccagggagaccacct
gtaagtcgtgggcccaacaggaagggtgggcgtggccagcgtcagcagaagaacacctac
aacagctacaactccatgcagagtcagtccagtcaggatgcctcccagccgttctcccag
ggtcccctgacccagggtcacctgtccatgtcccagccgtcccagatgggtcagtctggc
ctgtcccagccgggcctgtcccagcccgaactctcccaggatagctacctgggcgatgag
ttcaagtcccaggcagatgctgtcttgtcacaagactccacttaccagggggacagggca
taccaacacgcaggattctcccagtattga
DBGET
integrated database retrieval system
