KEGG   Bradyrhizobium betae: F8237_22875
Entry
F8237_22875       CDS       T06368                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bbet  Bradyrhizobium betae
Pathway
bbet03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bbet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F8237_22875 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbet03400]
    F8237_22875 (ligD)
Enzymes [BR:bbet01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F8237_22875 (ligD)
DNA repair and recombination proteins [BR:bbet03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F8237_22875 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QFI77278
UniProt: A0A5P6PGJ2
LinkDB
Position
4772317..4774983
AA seq 888 aa
MLRKLSTYRLKRDFEKTPEPSGKIAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVMLWDRGTWDCDDPEAGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEYASESEDILSADKSVASG
RAMAQIAGGKGRAPKPFMLAKGAKSRADAVWQSNRAGETEGRTVKPAPRAALKISKAAKK
KATVATTAKEVPEMPDFVAPQLCTLVERPPSGDGWCHEIKFDGYRVQLRIEDGKATLRTR
KGLDWTSKFAAIAKEAGSLPDAMIDGEIVALDHNGAPNFSSLQAALSDGKTNELIFFAFD
LLFAEGLDCRRLPLGERKERLKALLEARKKKASQIRYVEHFESGGEAVLQSACKLELEGI
VSKKVDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMAGVYRGDHLAFVGIVG
TGFGADKVKRIMPLLKEAASSESPFGGKNAPKKTRDVHWVKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPADIALARPSARKRVSAKSGKSRDAGVAEVMGVVISKPDK
ELWPDGGDGEGVTKLDLARYFEAVGDWMIEHLKGRPCSILRAPDGIGGEKFFQRHAMQGS
SNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGLELHPWNCAPNAYDTPGRLVFDLDPAP
DVEFSDVVDAAKQMRQRLTDLGMDSFCKTTGGKGLHVVVPLLHGARDRVSWKEAKAFAQG
VCQWMADDDPERYLLNMSKKLRSGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWA
QVKSDLDPKRYTVRTVPGVLARSKAWDGYDDAATSIKAAMKKLAAKKT
NT seq 2667 nt   +upstreamnt  +downstreamnt
gtgctgcgaaaactctccacctatcgactgaagcgggatttcgagaagacgccggagccc
tccggcaagatcgccgtggcgccgtcgaagcagcggcgtttcgtgatccagaagcacgat
gcgacgcggctgcactacgatctgcggctggaattcgacggcgtcttcaaatcatgggcg
gtgacgaaggggccctcgctcgatccgcgcgacaagcggctggcggtggaggtcgaggac
catccgctcgactatggcgattttgaaggcacgattcccgaagaccagtacggcggcggc
accgtgatgctgtgggatcgcggcacctgggactgcgatgatccggaggccggcttcaag
aagggtgatttgaagttcacgctgcacggcgagaagctgcatggaagctgggtgctggtg
cggatgcgcaatgaccgcaccggtggcaagcgtaccaactggctgctgatcaagcaccgc
gacgaatatgccagtgagagcgaggacattctcagcgcggacaagtcggtcgcctctggc
cgtgcgatggcacagatcgccggcggcaagggccgcgcgccgaagcccttcatgctggcg
aagggcgccaagagcagggctgatgcggtctggcagtccaaccgcgcgggggagacggag
gggcgcacggtcaagccggcgcctcgcgcggcactgaagatctccaaggcggccaagaaa
aaggccacggttgcgacaactgccaaggaagtcccggagatgccggacttcgtcgcgccg
cagctctgcacattggtcgagcgcccgccgtcgggagatggctggtgccacgagatcaag
ttcgacgggtaccgggtgcagcttcggatcgaggatggcaaggctacactgaggacgcgc
aagggcctcgactggaccagcaaattcgcggcgatcgcgaaggaggcaggttcgttgccg
gacgcgatgatcgacggcgagatcgtcgcgctggaccacaacggcgcgccgaatttctct
tcgctccaggcggcgctgtcggatggcaagaccaacgagctgatcttcttcgccttcgac
ctgctgttcgccgaaggcctcgattgccgccgcctgccgctcggcgaacgcaaggagcgt
ctcaaggcattgctggaggcccgcaagaagaaagcgagccagatccgttatgtcgagcat
ttcgagagcggcggtgaagctgtgctgcaatctgcctgcaagctcgagctcgaaggcatc
gtgtcgaagaaggtggatgcgccgtatcgctccggccgaaccgagagctggaccaaggcg
aaatgccgcgcgggccacgaggtcgtgatcggaggctggaagacgacggccggaaaattc
cgctcgctgatggctggcgtttatcgcggcgatcacctcgcctttgtcggcatcgtcggc
accggctttggcgccgacaaggtcaagcgcatcatgccgctgctgaaggaggcggcgtcg
agcgagagcccgttcggcggcaagaacgcgccgaagaagacccgcgacgtgcactgggtg
aagcccgagcttgtcgctgagatcgagttcgccggcttcaccgccgatggcaacatccgc
caagccgctttcaagggcctgcggcaggacaagccggccgaggaggttgaggcggaaacg
cctgccgatatcgcgcttgcccggccctcggcgcgaaagcgtgtttcggcgaagtccgga
aaaagcagggacgccggcgtcgccgaggtgatgggtgtcgtgatttccaagccggacaag
gagctgtggccggatggcggcgacggggagggcgtgacgaagctcgatctcgcccgctat
ttcgaagcggttggcgactggatgatcgaacacctgaaaggccgcccctgttcgatcctg
cgcgcgcccgacggcatcggcggcgagaaattcttccagcgccatgccatgcagggcagc
tcgaacctgctcgaactcgccaaggtctccggcgaccgcaagccttatttgcagatcgat
cgcgtcgaaggcctcgccgcggttgcacagatcggcggcctcgagctgcatccctggaat
tgcgcgccgaatgcttacgacacgcccggccggctggtgttcgatctcgatccagcgccg
gacgtcgagttttccgacgttgtcgacgcggccaagcagatgcggcagcggctgactgat
ctcggcatggacagcttttgcaagaccactggcggcaaggggctgcacgtcgtggtgccg
ttgctccacggggctcgcgacagggtgagctggaaggaagccaaggcctttgcgcaaggg
gtctgccagtggatggcggatgacgatcccgagcgctatctgctcaacatgtccaagaag
ctgcggagcgggaagatcttcctcgactatctgcgtaacgatcggctgtcgactgcggtg
gcgccgctgtctccgcgcgcccgcgatggcgcgacggtctcgatgccggtaacctgggcg
caggtgaagagcgatcttgatccgaagcgatatacggtgcggacggtgccgggcgtgctg
gcgcgctcgaaggcgtgggatggctatgacgacgcggctacgtcgatcaaggctgcgatg
aagaagctcgcagcgaagaagacgtag

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