Bradyrhizobium betae: F8237_22875
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Entry
F8237_22875 CDS
T06368
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbet
Bradyrhizobium betae
Pathway
bbet03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F8237_22875 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbet03400
]
F8237_22875 (ligD)
Enzymes [BR:
bbet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F8237_22875 (ligD)
DNA repair and recombination proteins [BR:
bbet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F8237_22875 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QFI77278
UniProt:
A0A5P6PGJ2
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All DBs
Position
4772317..4774983
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AA seq
888 aa
AA seq
DB search
MLRKLSTYRLKRDFEKTPEPSGKIAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVMLWDRGTWDCDDPEAGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEYASESEDILSADKSVASG
RAMAQIAGGKGRAPKPFMLAKGAKSRADAVWQSNRAGETEGRTVKPAPRAALKISKAAKK
KATVATTAKEVPEMPDFVAPQLCTLVERPPSGDGWCHEIKFDGYRVQLRIEDGKATLRTR
KGLDWTSKFAAIAKEAGSLPDAMIDGEIVALDHNGAPNFSSLQAALSDGKTNELIFFAFD
LLFAEGLDCRRLPLGERKERLKALLEARKKKASQIRYVEHFESGGEAVLQSACKLELEGI
VSKKVDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMAGVYRGDHLAFVGIVG
TGFGADKVKRIMPLLKEAASSESPFGGKNAPKKTRDVHWVKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPADIALARPSARKRVSAKSGKSRDAGVAEVMGVVISKPDK
ELWPDGGDGEGVTKLDLARYFEAVGDWMIEHLKGRPCSILRAPDGIGGEKFFQRHAMQGS
SNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGLELHPWNCAPNAYDTPGRLVFDLDPAP
DVEFSDVVDAAKQMRQRLTDLGMDSFCKTTGGKGLHVVVPLLHGARDRVSWKEAKAFAQG
VCQWMADDDPERYLLNMSKKLRSGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWA
QVKSDLDPKRYTVRTVPGVLARSKAWDGYDDAATSIKAAMKKLAAKKT
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgaaaactctccacctatcgactgaagcgggatttcgagaagacgccggagccc
tccggcaagatcgccgtggcgccgtcgaagcagcggcgtttcgtgatccagaagcacgat
gcgacgcggctgcactacgatctgcggctggaattcgacggcgtcttcaaatcatgggcg
gtgacgaaggggccctcgctcgatccgcgcgacaagcggctggcggtggaggtcgaggac
catccgctcgactatggcgattttgaaggcacgattcccgaagaccagtacggcggcggc
accgtgatgctgtgggatcgcggcacctgggactgcgatgatccggaggccggcttcaag
aagggtgatttgaagttcacgctgcacggcgagaagctgcatggaagctgggtgctggtg
cggatgcgcaatgaccgcaccggtggcaagcgtaccaactggctgctgatcaagcaccgc
gacgaatatgccagtgagagcgaggacattctcagcgcggacaagtcggtcgcctctggc
cgtgcgatggcacagatcgccggcggcaagggccgcgcgccgaagcccttcatgctggcg
aagggcgccaagagcagggctgatgcggtctggcagtccaaccgcgcgggggagacggag
gggcgcacggtcaagccggcgcctcgcgcggcactgaagatctccaaggcggccaagaaa
aaggccacggttgcgacaactgccaaggaagtcccggagatgccggacttcgtcgcgccg
cagctctgcacattggtcgagcgcccgccgtcgggagatggctggtgccacgagatcaag
ttcgacgggtaccgggtgcagcttcggatcgaggatggcaaggctacactgaggacgcgc
aagggcctcgactggaccagcaaattcgcggcgatcgcgaaggaggcaggttcgttgccg
gacgcgatgatcgacggcgagatcgtcgcgctggaccacaacggcgcgccgaatttctct
tcgctccaggcggcgctgtcggatggcaagaccaacgagctgatcttcttcgccttcgac
ctgctgttcgccgaaggcctcgattgccgccgcctgccgctcggcgaacgcaaggagcgt
ctcaaggcattgctggaggcccgcaagaagaaagcgagccagatccgttatgtcgagcat
ttcgagagcggcggtgaagctgtgctgcaatctgcctgcaagctcgagctcgaaggcatc
gtgtcgaagaaggtggatgcgccgtatcgctccggccgaaccgagagctggaccaaggcg
aaatgccgcgcgggccacgaggtcgtgatcggaggctggaagacgacggccggaaaattc
cgctcgctgatggctggcgtttatcgcggcgatcacctcgcctttgtcggcatcgtcggc
accggctttggcgccgacaaggtcaagcgcatcatgccgctgctgaaggaggcggcgtcg
agcgagagcccgttcggcggcaagaacgcgccgaagaagacccgcgacgtgcactgggtg
aagcccgagcttgtcgctgagatcgagttcgccggcttcaccgccgatggcaacatccgc
caagccgctttcaagggcctgcggcaggacaagccggccgaggaggttgaggcggaaacg
cctgccgatatcgcgcttgcccggccctcggcgcgaaagcgtgtttcggcgaagtccgga
aaaagcagggacgccggcgtcgccgaggtgatgggtgtcgtgatttccaagccggacaag
gagctgtggccggatggcggcgacggggagggcgtgacgaagctcgatctcgcccgctat
ttcgaagcggttggcgactggatgatcgaacacctgaaaggccgcccctgttcgatcctg
cgcgcgcccgacggcatcggcggcgagaaattcttccagcgccatgccatgcagggcagc
tcgaacctgctcgaactcgccaaggtctccggcgaccgcaagccttatttgcagatcgat
cgcgtcgaaggcctcgccgcggttgcacagatcggcggcctcgagctgcatccctggaat
tgcgcgccgaatgcttacgacacgcccggccggctggtgttcgatctcgatccagcgccg
gacgtcgagttttccgacgttgtcgacgcggccaagcagatgcggcagcggctgactgat
ctcggcatggacagcttttgcaagaccactggcggcaaggggctgcacgtcgtggtgccg
ttgctccacggggctcgcgacagggtgagctggaaggaagccaaggcctttgcgcaaggg
gtctgccagtggatggcggatgacgatcccgagcgctatctgctcaacatgtccaagaag
ctgcggagcgggaagatcttcctcgactatctgcgtaacgatcggctgtcgactgcggtg
gcgccgctgtctccgcgcgcccgcgatggcgcgacggtctcgatgccggtaacctgggcg
caggtgaagagcgatcttgatccgaagcgatatacggtgcggacggtgccgggcgtgctg
gcgcgctcgaaggcgtgggatggctatgacgacgcggctacgtcgatcaaggctgcgatg
aagaagctcgcagcgaagaagacgtag
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