Bradyrhizobium betae: F8237_32370
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Entry
F8237_32370 CDS
T06368
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbet
Bradyrhizobium betae
Pathway
bbet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F8237_32370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbet03400
]
F8237_32370 (mfd)
Enzymes [BR:
bbet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F8237_32370 (mfd)
DNA repair and recombination proteins [BR:
bbet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F8237_32370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_25
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFI76685
UniProt:
A0A5P6PEG7
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All DBs
Position
6719502..6723020
Genome browser
AA seq
1172 aa
AA seq
DB search
MKPGSKSPAELLTPGRALTLANVAEGAEGLVISDLARAIAARPKKPTVSLAVVCRDGARM
QQLERALQFFAPDLPVLQFPAWDCQPYDRVSPHGGILAQRLTTLARLAPLTGSDKPLIVL
TTVNAIVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRALDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAVRERFKQIADYYQARRDAMELPGGGAIYKPLPPDRLYLTEEEWTRRLGDIPLARLTQF
SVPADGSSVVDAGARKGRDFAPERNDSSVNVFAAVVSHVMALHAQRKKVVVTLWSEGSRD
RMTSMLRDHKLTHTTSVNSWRTVQATPRNETMLAVLGLEAGFETDEIAIISEQDILGDRL
VRPRKASRKLDNFISEITSLTAGDIVVHADHGIGRFVGLQTLDVAGAPHDCLELHYAAEA
KLFLPVENIELLSRYGSDQTAVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHHRTFTERFKGFPVNVAQASRLVPAKELNLVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRAEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPSITIGMPVLIPEDYVGDLSVRLSLYRRLADLDSEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRQANVGKIDAGPKGAVIAFRDNSFAHPDRLVSFIRSYGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAQSKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctggttcgaagtcgccggccgagctgctgacgcccggccgcgcgctgacgctt
gccaacgtcgccgagggcgccgagggcctcgtcatctccgatctcgcgcgcgccatcgcg
gcgcggccgaagaagccgacggtcagccttgccgtcgtctgccgcgacggggcgcggatg
cagcagctcgaacgcgcgctgcaattcttcgcgcccgatctgccggttctgcagttcccg
gcctgggactgccagccctatgatcgtgtctcgccgcatggcggcatcctggcgcagcgc
ctgaccacgctggcgcggctggcgccgctgaccggcagcgacaagccgctgatcgtgctg
accacggtgaacgccatcgtgcagcgcgtgcccgcgcgcgagctggtcgcggcgcaggcg
ctgtcggtcgcgcccggcaacgtggtgcccatggataccatcgtcgcctggctcgagcac
aacggctacaaccgttcctcgactgtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctcgacctgtttccggccggcctcgaccagccggttcgtttcgatttcttcggcgac
agcctggaatcgatccgcaccttcgacgcggagacccagcgcacgctgctcgacatgcgc
gcgctcgacctcgtgccgatctcggaattccagctcgtcaccgacaccatccgccgcttt
cgcatgggctatgtcgccgagttcggcgcgcctgagcgcgacgatgcgctgtacgaggcc
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgc
atggacacgctgttcgactatctgcaaggggccgccgtcgcgatcgagccgcaggccgag
gacgccgttcgcgagcgtttcaagcagatcgccgactattaccaggcccgccgcgatgcg
atggagcttcccggcggcggcgccatctacaagccgctgccgcctgacaggctgtacctg
accgaggaggagtggaccaggcgcctcggcgacatcccgctggcgcggctaacgcagttt
tccgtgccggccgatggctccagcgtcgtcgatgccggcgcacgcaagggccgcgacttc
gcgccggagcgcaacgacagcagcgtcaacgtgttcgcggcggtggtcagccacgtcatg
gccttgcatgcccagcgcaagaaggtcgtggtcacgctgtggagcgaaggctcgcgcgac
cgcatgacctcgatgctgcgcgaccacaagctgacccacaccaccagcgtcaacagctgg
cgcacggtgcaggcgaccccgcgcaacgagactatgctcgccgtactcggcttggaggcc
ggtttcgagaccgacgagatcgccatcatcagcgagcaggacatcctcggcgaccgcctg
gtgcggccacgcaaggccagccgcaagctcgacaatttcatctcggagatcacgagcctc
accgccggcgacatcgtcgtccacgccgatcacggcatcggccgcttcgtcggcctgcag
acgctcgacgtcgccggcgcgccgcatgattgtctcgagctgcactatgccgccgaggca
aagctgtttctcccggtcgagaacatcgagctattgtcacgctacggctccgaccagacc
gcggtcgagctggatcgtctgggcggctccggctggcagacccgcaaggcgaaactcaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgccgccgcgcgccatctgcac
gaggcgcccaagctgccggtgcagcccggcctctacgacgagttctgcgcgcgcttcccc
tatgacgagaccgaggaccagctcggggcgatcgaatccaccctgaaggatctcgagctc
ggccgtcccatggaccggctgatctgcggcgacgtcggcttcggcaagacggaagtcgcc
ttgcgcgcggcctttgccgtcgcgctcgaaggcaagcaggtcgccgtcgtggtgccgacc
acgctgctggctcgccagcatcaccgcaccttcaccgagcgcttcaagggctttccggtg
aacgtggcgcaggcctcgcgcctggtcccggccaaggagctcaacctggtcaagaagggc
atcgccgatggctccgtcgacatcgtcgtcggcacccacgcgctgctcggcaaggcgatc
aagttccgcgacctcggcctcgtcatcgtcgacgaggagcagcatttcggcgtcacccac
aaggagcggctgaaggcgcttcgcgccgaggtgcacgtgctgacgctgtcggcgacgccg
attccgcgcacgctgcaactggcgctcaccggcgtccgcgagctctcgatcattgcctcg
ccgccggtcgatcgcctcgcggtgcgcaccttcgtcgccccgcacgatcccctgatgatc
cgcgaggcgctgctgcgcgagcgctatcgcggcggccaggctttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgcctgagatgaaggtc
gcggtcgcgcacggccagatgccgcccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacatcctgctgtcgacgacgatcgtcgagtccggcctcgacattccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggccttgcccagctctatcag
ctccgcggccgcgtcggccgttccaagctgcgggcttacgcactgttcacgctgccggcg
cagcagaaaatcacggcgcaggccgaacgccggctcaccgtgctgcaatcgctggagacg
ctgggcgcaggcttccagctcgcctcgcacgacctcgacatccgcggcgcgggcaatctg
ctcggcgaggaacagtccggccacatcaaggaggtcggcttcgagctttaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtctccgagcccgcggcggaccgctgg
tcgccgtcgattaccatcggcatgcccgtgctgattccggaggactatgtcggcgatctc
tcggtgcggctgtcgctgtatcggcggctcgccgatctcgacagcgaggaggagatcgag
aatttcggcgccgagatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctatctg
ttcaaggtcgccgccatcaaggcattctgccgccaggccaatgtcgggaagatcgacgct
ggcccaaagggcgccgtcatcgccttccgcgacaattcctttgcgcatcccgaccgcctg
gtgtcgttcatccgcagctacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcctgcaggactgggagacgccggaagaacgcctcgccggcaccaccgagatcatgcgg
cagctcgcgcaacttgcgcagagcaagaaggcggcgtaa
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