Bordetella bronchiseptica 253: BN112_4597
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Entry
BN112_4597 CDS
T02344
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbh
Bordetella bronchiseptica 253
Pathway
bbh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN112_4597 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbh03400
]
BN112_4597 (mfd)
Enzymes [BR:
bbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN112_4597 (mfd)
DNA repair and recombination proteins [BR:
bbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN112_4597 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
AAA_30
ELP6
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CCJ56511
UniProt:
A0A0C6PA35
LinkDB
All DBs
Position
complement(4961343..4964798)
Genome browser
AA seq
1151 aa
AA seq
DB search
MPDLTPPAVPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLVVLTADPL
EAQRLADEIPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDILTVP
VTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLI
DLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARNRFRA
RFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAADTITVTVGDIDD
AMQRFAHDTRSRYDFLKVDRERPVLPPDTLFLDHEALFARLKDFPRLALMAERPHPDFAA
APDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGEHGLAPEAQADSIQ
AFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGATRRGKRTQERTSNVEAMV
RDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVIAR
YSGADPDAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYAFKLPMSDYE
AFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQ
VALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTH
KILSKDVRFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIR
DFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQVYFLHNEVETIHNRRARLEE
LVPEARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRF
GLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLE
IRGTGEILGDSQSGNIQEVGFSMYNEMLNEAVRALKAGEEPDLDAPFNLACEVNLHAPAL
LPSDYCPDVHGRLAIYKRLSHADGEDDLIRIQEELIDRFGKLPEAAQTLLATHRLRLAAQ
PLGIVKIDASETQALLQFGAKTTVDPLRIIELVQRQRHIKLSGQDKLRVEIKAPQIAARA
DAVRAVLRALK
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatctcactccgcccgccgtgcccatccccgccaccgccaccaccctgtccgcc
ctcaagccgggagcgcgctttacgcagccccgcccgcccggatccggcgacggatggctg
ctggcggacctggcgcgccaggccggcaagccgctggtggtgctgacggccgacccgctg
gaggcccagcggctggccgatgaaatcccgcaattcgcgcccgaactgcgcgtgcgccag
ttgcccgactgggaaaccctgccctacgacgcgttctcgccccaccaggacctgatctcg
caacgcctgcgcacgctgcacgcgctcatgaaccagggcgtggacatcctgaccgtgccg
gtcaccaccgccctgtaccgcctggcgccgcccgccttcctggccgcgtatacgttttcg
ttcaagcagaaggaccggctcgacgaagcggccctgcgcgcgcagctgacgctggccaac
tacagccacgtcacccaggtcaccgcgccgggcgaattctgcctgcgcggcggcctgatc
gacctgtttcccatgggttcggtggtgccctaccggctggacctgttcgacgacgagatc
gaatcgatccgcagcttcgacgtcgacacgcagcgcagcctgtatccggtgggcgaagtg
cagttgctgcccggccgcgagtttcccatggacgaagaggcgcgcaaccgcttccgggcg
cggtttcgcgaagtgttcgaaggcgacccctcccgcgccctgccgtacaaggacatcggc
aacggcatcgcgttcgccggcatcgagtattacctgcccctgttcttcgagcagaccgcc
accctgttcgattacctggcggccgacacgatcaccgtcacggtgggcgacatcgacgac
gccatgcagcgcttcgcccatgacacccgcagccgctacgactttctcaaggtcgaccgc
gaacggccggtgctgccgccggacaccctgttcctcgaccacgaggcgctgttcgcgcgc
ctgaaagacttcccgcgcctggccttgatggcggagcggccgcatccggacttcgccgcc
gcgcccgatgtcgccgtggcgcgccgcgccgacgaccccgtggcgcgcctgcgcgcgctg
ctggcgcagaccggcgaccgcgtgctgctgtgcgccgattcggccggccggcgcgagacg
ctggcgcaaatgctgggcgaacacggcctggcgcccgaggcgcaggccgattcgatccag
gccttcctggacgacggcgcgcgcttcggcctggccgtggcgccgctgtcggccggcttc
tgcgtgcccggcggcgccctgctgttcctgaccgagaacgacctctaccccggccatgcc
ggcgccacccggcgcggcaagcgcacccaggaacgcaccagcaatgtcgaagccatggtg
cgcgacctggccgaactgcgcgccggcgacccggtggtgcacgcccagcacggcatcggc
cgctaccacgggctggtcaacatggacatgggcgaaggcgagatggagttcctgcatctc
gaatacgccagcggcagcacgctgtacgtgcccgtgtcgcagctgcacgtcatcgcccgc
tacagcggcgccgacccggacgccgcccccctgcaccagctcggttcgggccaatgggac
aaggcgcgccgcaaggcggccaggcaggtgcgcgacaccgcggccgaactgctggccctg
tatgcgcagcgcgccgcccgcgaaggctatgccttcaagctgcccatgagcgactacgaa
gccttcgccgaaggtttcggcttcgaggagacgcccgaccaggcggccgccatccaggcc
gtcatcatggacatgacctcgggccgccccatggaccggctggtatgcggcgacgtgggc
ttcggcaagaccgaggtcgcgctgcgcgccgccttcctggccgtggccaacggcaagcag
gtcgcgctgctgtgccccaccaccctgctggccgagcagcatgcccagacgttttccgac
cgcttcgccgactggccggtgcgcgtcgtggagctgtcgcgctttcgctccgccaaggag
gtggccgccgccgtcgaaggcatcaacgacggccgcgtggacatcgtcatcggcacgcac
aagatcctgtccaaggacgtgcgcttcaagcggctgggcctggtcatcatcgacgaggaa
caccgctttggcgtgcgccagaaggaaaccctcaaggcgctgcgcgccgaggtcgacgtg
ctgaccctgacggccaccccgatcccgcgcacgctgggcatgtcgctggaaggcatccgc
gacttctccgtgatcgcgacggcgccgcagaagcggctggccatcaagaccttcgtgcgg
cgcgaggacggcagcaccatacgcgaagcgctgctgcgcgagctcaagcgcggcggccag
gtgtatttcctgcacaacgaggtcgagaccatccacaaccggcgggcgcgcctcgaagaa
ctggtgcccgaggcccgcatcgcggtcgcccacggccagatgcccgaacgcgagctggaa
caggtcatgaagggcttctaccagcagcgccacaacgtgctgctgtgcaccaccatcatc
gaaaccggcatcgacatccccaccgcaaacaccatcgtcatccaccgcgccgaccgcttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcggacgctcgcaccaccaggcctac
gcctatctgctgacgccgggcgaggatgccatcacgaacaacgccaagaagcgcctggag
gccatccaggccatggaagagctcggttcgggcttctacctggccatgcacgacctggaa
atccgcggcaccggcgaaatcctgggcgactcgcaatcgggcaacatccaggaggtgggc
ttctcgatgtacaacgagatgctcaacgaagcggtgcgggcgctgaaggcgggcgaggag
cccgacctggacgcgcccttcaacctggcctgcgaagtcaacctgcacgcgccggcgctg
ctgccgtcggactactgtcccgacgtgcatggccgcctggccatctacaagcgcctgtcg
catgccgacggcgaagacgacctgatccgcatccaggaagaactcatcgaccgtttcggt
aaactgcccgaagccgcgcagacgttgctggccacgcaccgcctgcgcctggccgcgcaa
ccgctgggcatcgtcaagatcgatgccagcgaaacgcaggccctgctgcagttcggtgcc
aagaccacggtcgaccccttgcgcatcatcgagctggtgcagcgccagcgccatatcaag
ctgtccggccaggacaaactgcgggtggagatcaaggcgcctcagatcgccgcccgcgcc
gacgccgtgcgcgccgtcctgcgcgcactgaaataa
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integrated database retrieval system
