Bifidobacterium bifidum S17: BBIF_0739
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Entry
BBIF_0739 CDS
T01328
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBIF_0739 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0739 (mfd)
Enzymes [BR:
bbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBIF_0739 (mfd)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBIF_0739 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AroM
Motif
Other DBs
NCBI-ProteinID:
ADO52944
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All DBs
Position
904867..908466
Genome browser
AA seq
1199 aa
AA seq
DB search
MAAEQGRARGKASAAMATRVQNALIDGSLCGILERLDEDPAFHRLVSGGMSIADGKDIAP
IITVGAPDGLRPAIAAAQAEHTPVVLVVASSREAEDTVNALRSWYDGDPNDIAQLEAWET
LPHERLSPRADTVASRMAVFRRLTHPSDTNPMFGPIRILVMPVRSLIQPVVKGLGDVDPL
VFTQGEELPLDDVSRRLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTAPHPVRIEFFGDE
IDSIREFHASDQRTYGEGVRTIWATPCRELQLTDAVRDRAKRLIGQIPNADDMLESIANA
IPIEGMESLMPALIDDMEPVTGMLDRHAVIMLADSEKLRRAADDLSKTANEFLAASWHVA
AAGHGAGAPISFDQASFLDYEETINSLAYSSHDVWSLTSFGVDASRPNHVQLAAGNPGEY
RGDETKAAAGIEGLIDAGYQVTVTAAAQGTLARLKRAINETGIASFDVIRSQAIDGFIDT
AAKTALLTERDLTGRSSAAGQAKTPKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRT
IGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDLISKYIGAEAPKLNKLGGSDWAA
TKAKARKHVHEIAEDLVKLYSARQRTKGFAFSPDTPWQKELEDAFPYQETTDQLTTIDDV
KSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHHETFTER
YEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIGTHKLLNPKIKFKDLGLVIIDEEQ
RFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGA
YEDAQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDG
VIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYA
YFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGF
DLYVRMVSEAVEQYKEPERTEPVAVTIDLPIEASIPVDYIDSDKLRLEAYRKLAASRTDE
DLKELADELTDRYGKLPEEFETLFGVARLRMKARELGISEIVAQGKNVRVGKIDPPESMQ
MRINRIYRGAQYRPVTHTYLIPAPFAGTLGGKPMPGDQVMDWVSDLLHDFAWKPQPRKA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgagcagggacgcgcgcgcggcaaagcgtccgccgccatggccacacgcgtc
cagaacgcgctgatcgacggctccctgtgcggcatcctcgaacggctcgatgaggatccg
gcattccatcggctcgtcagcggcggcatgagcatcgccgacggcaaggacatcgccccg
atcatcaccgtgggcgccccggacgggttgcgcccggccatcgccgcagcgcaggcggaa
cacacccccgtcgtcctggtcgtggcctccagccgcgaggccgaggacaccgtgaacgcg
ctgcggtcgtggtacgacggcgacccgaacgacatcgcacaactggaggcctgggagacg
ctgccccacgagcggctcagtccccgtgccgacaccgtggcgagccgcatggccgtattc
cgcaggctcacgcaccccagcgacaccaatccgatgttcggaccgatccgcatactcgtc
atgccggtgcgttcgctgatccagcccgttgtcaaggggctcggcgacgtcgatccgctc
gtcttcacgcaaggcgaggagctgcctctcgacgacgtgtcgcgccgactggttgagaac
gcctacacgcgcgtcgacctggtgatggaccgtggcgagttcgcggtgcgcggcggcatc
atcgacgtctttcccccaaccgcgccacatccggtgcgcatcgagttcttcggtgacgag
atcgactccatccgagaattccacgcgtccgaccagcgcacctacggcgagggcgtccgc
acgatctgggcgacgccctgccgtgaactgcagctcaccgacgccgtgcgggaccgggcg
aaacggctcatcgggcagattccgaatgccgacgacatgctggagtccatcgcgaacgcg
attcccatcgaaggcatggaatccctgatgcccgcgctcatcgacgacatggaacccgtg
accggcatgctcgacaggcatgccgtcatcatgctcgccgactcggaaaagctgcgccgc
gcggcggacgacctctcgaaaaccgcgaacgagttcctcgccgccagctggcatgtcgcc
gcggccgggcacggtgccggagctcccatcagcttcgaccaggccagcttcctcgactac
gaggagaccatcaactcgctcgcatactccagccacgacgtgtggagcctcaccagtttc
ggcgtggacgccagccgcccgaaccacgtgcagctcgccgccggcaacccgggcgaatac
cgcggtgacgagacgaaggccgcggccggcatcgaggggctcatcgacgcggggtaccag
gtcaccgtcaccgcggccgcgcagggcacgctcgcacgattgaagcgagccatcaacgag
accggcatcgcctcgttcgacgtcatccgctcccaggccatcgacgggttcatcgacacg
gcggcgaagaccgcgctgctcaccgaacgcgacctgaccggacggtccagtgcggccggt
caggcgaagacccccaagcgccgccgcaaggcaatcgacctgatggagctcaaagccgga
gactacgtggtccatgagcagcacggcatcggccgtttcctggagatgcggcagcgcacc
atcggcaccggggcgaacaagaccacgcgcgaataccttgtcatcgaatacgcgcccagc
aagcgcggcgccccggccgacaagctgttcatccccaccgaccagctggatctgatcagc
aaatacatcggcgcggaggcccccaagctcaacaagctcggcggctccgactgggccgca
accaaggcgaaggcgcgcaagcacgtgcacgagatcgccgaggacctggtgaagctgtac
tctgccaggcagcgcaccaaggggttcgcgttcagccccgacacgccatggcagaaggag
ctggaggacgcgttcccgtatcaggagacgacggaccagctcaccaccatcgacgatgtc
aagtccgacatggagaaaccagtgccgatggatcgcctcatctgcggcgacgtcggcttc
ggcaagaccgagatcgccgtgagagcagcgttcaaggccatacaggacggcaagcaggtg
gccgtcctcgtgccgactacgctgctcgtgcagcagcatcacgagacgttcaccgaacgg
tacgagggcttcccggtcaccgtcgcggccatgagccgcttccagacgaccaaggagatc
aacgagaccatcgagggactggagacgggtggcgtcgacgtcgtcatcggcacccacaag
ctgctcaaccccaagatcaagttcaaggatctcggccttgtcatcatcgacgaggagcag
cggttcggcgtcgagcacaaggagacgctcaaggcgctgcgcaccaatgtggacgtgctc
tcgctgtccgccacgcctatcccgcgcacgctggagatggcggtgaccggcatccgtgag
atgtctacgctcgccaccccgcccgaggaccggcttcccgtgctcacctacgtgggcgcg
tacgaggacgctcaggtcacggccgcggtccggcgcgaactgctgcgcggcggacaggtg
ttctacgtgcacaaccgcgtgcaggacatcgcgaagacggccgcgaagatccacgagctc
gtccccgaggcgcgagtcggcatcgctcacggcaagatgggggagaagcagctcgacggc
gtaatccgcgacttctggcatcgcgacatcgacgtgctcgtatgcacgacgatcatcgag
accggactcgacatctccaacgcgaacacgctgatcgtagaccacgccgaccggttcggc
ctctcccagctgcaccagctgcgcgggcgcgtcggccgtggccgcgaacgcgcgtacgcc
tacttcctgtacgacccgtccaagccgatgacccagcagtcgcacgaccgcctcgccacc
atcgcgcagaacacggcgctcggaagcggcttcgacgtcgccatgaaggacctcgaactg
cgcggcaccggcaacctgctgggcgacgaacagtccgggcacatcgagggcgtcggcttc
gacctgtacgtgcgcatggtctcggaagccgtcgaacagtacaaggagccggagcggacc
gagccggtcgcggtcaccatcgacctgcccatcgaagcgtccatcccggtggactacatc
gattccgacaagctgcggctcgaagcataccggaaactggccgcttcgcgcaccgatgag
gacctcaaggaactcgccgacgaactcacggatcgctacggcaaactgccggaggagttc
gagacgctgttcggcgtggcccgcctgcgcatgaaggcgcgggaactcggcatatcggag
atcgtcgcgcagggcaagaacgtgcgcgtcggcaagatcgacccgcccgaatcgatgcag
atgcgcatcaaccgcatctaccgcggggcgcaataccggccggtcacgcacacatacctg
atccccgcgccgttcgcgggcacgctcggcggcaaaccgatgccgggcgatcaggtcatg
gactgggtgagcgacctgctgcacgacttcgcatggaagccgcaaccgaggaaggcatga
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