Bison bison bison (American bison): 104993896
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Entry
104993896 CDS
T08726
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbis
Bison bison bison (American bison)
Pathway
bbis03013
Nucleocytoplasmic transport
bbis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104993896 (UPF1)
03015 mRNA surveillance pathway
104993896 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbis03019
]
104993896 (UPF1)
Enzymes [BR:
bbis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104993896 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104993896 (UPF1)
Messenger RNA biogenesis [BR:
bbis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104993896 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104993896 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104993896
NCBI-ProteinID:
XP_010845602
Ensembl:
ENSBBBG00000003867
UniProt:
A0A6P3I1P3
LinkDB
All DBs
Position
Unknown
AA seq
1204 aa
AA seq
DB search
MRSVEGGSLGFGNSFPLLNSDPLIHGAAVGTKHNHSSQAALLGLILDGCPSVLPFPRPAV
LQERCGRWLLLGGRSKVEEEANAQAEAQKKKDEAEVQTYLARIKAGPFGPLPWTWDNYGL
ALFSAVAECLIGEYKKSHQKKLDCLTVESRPVLHGKVAMAAHVGGPEGILQNGAVDDSVA
KTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGS
HIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCA
SQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPS
ATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWD
LGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIE
LRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVI
IKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGN
GPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPEL
QKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSIL
IDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIR
PIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQ
EEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLH
TKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVG
NPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAM
YDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPP
PGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGAL
TQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTG
LSQY
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcgtggaaggcgggagcctgggcttcggcaattccttccctttgctgaactcg
gatcctcttattcacggggctgctgtggggacgaaacacaatcatagctcccaggctgcc
ctccttggcctgattctcgacggctgcccctcggtacttccctttccgcgtcctgctgtg
ctccaggagcgctgtgggcggtggctcctgctggggggcagaagcaaagtggaggaagaa
gcgaatgcgcaggctgaagcgcaaaagaagaaagatgaggcagaggtccaaacctacctt
gctcgtatcaaagccggcccttttggcccactgccctggacctgggacaactatggacta
gctctcttctcagctgtggctgagtgtttgataggagagtataaaaagtcacatcagaag
aaactggactgtctcacagtggagagcaggccagtgcttcacgggaaggttgccatggct
gctcatgttggtggccctgagggcatcctgcagaacggggccgtggacgacagcgtggcc
aagaccagccagttgttggccgaattgaactttgaagaagatgaagaagatacctattac
acaaaggatctgcctgtacatgcctgcagttactgtggaatacacgatcctgcttgcgtg
gtttactgtaacaccagcaagaagtggttctgtaatggacgtggaaatacttctggcagc
cacattgtaaatcaccttgtgagggcaaaatgcaaagaggtgactctgcacaaggatggg
cccctaggggagacggttctggagtgttataactgcggctgccgcaacgtcttcctcctc
ggcttcatccctgccaaggccgactcggttgtggtgctgctgtgcaggcagccctgtgcc
agtcagagcagcctcaaggacatcaactgggacagctcccagtggcagcccctgatccag
gaccggtgcttcctgtcctggctggtcaagatcccttctgagcaggagcagctgcgggcg
cggcagatcaccgcccagcagatcaacaagctggaggagctctggaaggagaacccttct
gccaccttggaggacctggagaagcccggagtggacgaggagccgcagcatgtccttctg
cgctacgaggacgcctaccagtaccagaacatatttgggcctctggtcaagctggaggct
gactacgacaagaagctgaaagagtcgcagactcaagataacatcacggtcaggtgggac
ctgggccttaacaagaagagaatcgcctacttcactttgcccaagactgactctgacatg
cggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcgcccctctgg
aaagggatcggccacgtcatcaaggtccctgataattatggcgatgagattgctattgag
cttcggagcagcgtgggcgcccctgtggaggtgactcataacttccaggtggatttcgtg
tggaagtcaacctcattcgacagaatgcagagcgcactgaaaacctttgccgtggatgag
acctccgtgtcgggctacatctaccacaaactgcttggccatgaggtggaggatgtgatc
atcaagtgccagctgcccaagcgcttcacggcacaggggctccccgacctcaaccactct
caggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccagggcccaccg
ggcacaggaaagaccgtgacctcagccaccatcgtctaccacctggctcggcaaggcaac
gggcctgtgctggtctgtgctccaagcaacatagccgtggatcagctgactgagaagatc
caccagaccgggctgaaagtcgtgcggctctgcgccaagagccgcgaggccatagactcc
ccggtgtccttcttggccctgcacaaccagatcaggaacatggacagcatgccagagctc
caaaagctgcagcagctgaaggatgagactggggagctgtcgtcagcggacgagaagcgt
tacagagccctgaagcgcactgccgagagggagctgctcatgaacgcagatgtcatctgc
tgcacgtgtgtgggtgcaggagacccgaggctcgccaagatgcagttccgctccatttta
atcgacgaaagcacgcaggccaccgagccagagtgcatggtccctgtggtccttggagcc
aagcagctgatcctcgtgggtgaccactgccagctgggccctgtggtgatgtgcaagaag
gcggccaaggccgggctgtcgcagtcgctctttgaacgcctggtggtgctgggcatccgc
cccatccgcctccaggtccagtaccggatgcaccccgcgctcagcgccttcccatccaac
atcttctacgagggctctctccagaatggcgttaccgcagcggatcgtgtaaagaagggg
tttgactttcagtggccccaaccggataaaccaatgttcttctatgtgacccagggccaa
gaggagattgccagctcaggcacctcctacctgaacaggacggaggctgcaaacgtggag
aagatcaccacgaagctgttgaaggcgggcgccaagccggaccagatcggcatcatcacg
ccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggctccctgcac
accaagctctaccaggaggtggagattgccagcgtggacgcgttccaggggcgtgagaag
gactttatcatcctctcctgtgtgcgggccaatgagcaccaaggcattggatttttgaat
gaccccaggcgactcaacgtggccttgaccagagcacgatacggggtcattatcgtgggc
aacccgaaggccctgtccaagcagccgttatggaaccacctgctgaactactacaaggag
cagaaggtgctggtggagggacccctgaacaacctgcgggagagcctcatgcagttcagc
aagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgacgacagccatg
tatgatgcccgggaggccatcatcccagggtcggtctatgaccggagcagccagggccgg
ccctcgaacatgtacttccagacccacgaccagattggcatgatcagcgccggccccagc
cacgtggctgccatgaacatccccattcccttcaacctggtcatgccgcccatgccgcca
ccgggatattttggacaagctaatgggccagccgcaggccgaggcaccccgaaaggcaag
actggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagtcagacgaat
ctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccagggcgccctg
acccaaggctacatctccatgagccagccctcccagatgagccagcccggcctctcccag
cctgagctgtcccaggacagctaccttggagatgagtttaagtcacagatcgacgtggcg
ctgtcgcaagactccacataccagggcgagcgggcgtaccagcacggtggagtgacgggg
ctgtcccagtactag
DBGET
integrated database retrieval system
