Bordetella bronchiseptica MO149: BN115_2300
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Entry
BN115_2300 CDS
T02295
Name
(GenBank) Putative ATP-dependent DNA-ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbm
Bordetella bronchiseptica MO149
Pathway
bbm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN115_2300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbm03400
]
BN115_2300
Enzymes [BR:
bbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN115_2300
DNA repair and recombination proteins [BR:
bbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN115_2300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCJ59056
LinkDB
All DBs
Position
complement(2517540..2520002)
Genome browser
AA seq
820 aa
AA seq
DB search
MTQPLRQYRAKRDFRATAEPAGAAGRSRAAARASEGLSFVIQRHQARRLHYDFRLEIDGV
LVSWAVPKGPSRDPSVKRLAVHVEDHPLEYGGFSGDIPKGQYGAGHVDIWDSGVWIPRDD
PRRGLRRGKLHFALRGRRLAGDWVLVRMSGEQDQWLLRKEDDEAAVPGDDAERAPATPPP
ARGPAPAATPRGRRAAMPRTLAPQLATLVDGPPHGPGWSYEVKYDGYRILAACSAGGVRL
VSRGNEDWQARMAPLARALGALKLGRGWLDGEVVVLDERGVADFQLLQNALDGQAEGLVF
VAFDLPFWNGEDLRALPLQARQERLEDLLREVPEDAPLMLTQRLPVADDTEGKAAWNEAC
RLSLEGLICKRLDAPYRSGRSQSWLKLKCRPRQEFVIGGYTEPAGARRHLGALLVGLREG
RQLRYAGRVGTGFGAATLRTLGQRLAALRQDAKPFAGDVPRGRGDAAIHWVSPELVAEVN
YAGITRDGLLRQASFAGLRADKPASEVRGEVAARPPAAKAATPSRRAGDGRAEVAGVRIS
HPDRLAYREPDYTKLQLAEYYAAIGPHILPHLRQRRVALLRCPDGAGTTCFFQKHLSQAL
PAGVRRDGGHLVIESLPGLIALVQYGAIEFHTWGADTRHPDTPDRITLDLDPGPGVAWPA
IVEGAQMARLLMQEVGLEPFLKTTGGKGLHLVAPLRPTQPWDTVKDFARALARQLAVALP
DRFTANMAKARRERRIFVDYLRNGNGATAVAAFSARARDGAPVSMPLSWDALDAGDDLRG
ARWNIANALEQARRKPDPWADYAASRRTLGPRMQARLPRD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgacacagccactgcggcagtaccgcgcgaagcgcgatttccgcgccaccgccgaaccg
gccggcgccgctgggcgctcgcgcgcggccgcccgcgcaagcgaaggcctgtccttcgtc
atccagcgccatcaggcgcgccgcctgcattacgatttccgcctcgagatcgacggcgtg
ctggtgagctgggcggtgcccaagggcccgtcgcgcgatccttccgtcaagcgcctggcc
gtgcatgtggaagaccatccgctcgagtacggcggattctccggcgacattcccaagggc
cagtacggcgccggacatgtcgacatctgggacagcggcgtctggatcccgcgcgacgat
ccgcgccggggcttgcggcgcggcaagctgcatttcgcgttgcgcggccggcgtcttgcc
ggcgactgggtcctggtgcgcatgagcggcgagcaggaccaatggctgctgcgcaaggaa
gacgacgaggcggcggtgccgggcgatgacgccgaacgcgcgccggccaccccgccgccc
gcccgggggcctgccccggcggccacgccgcgcgggcgccgcgccgcgatgccgcgcacg
ttggcgccgcagctggccacgctggtggacggcccgccgcatgggccgggctggtcgtac
gaggtcaagtacgacggctaccgcatcctggcggcctgctcggccggcggcgtgcgcctc
gtcagccgcggcaacgaggattggcaggctcgcatggcgccgctggcgcgcgcgctgggc
gcgctgaagctggggcgcggctggctcgacggcgaggtcgtcgtgctcgacgaacgcggc
gtggccgatttccagctgttgcagaatgcgctggacggccaggccgaagggctggtgttc
gtcgcgttcgaccttcccttctggaatggcgaggacctgcgcgccctgcccctgcaagcc
aggcaagagcggctcgaggacctgctgcgggaggtgcccgaggacgcgccgctgatgctc
acgcaacggctgccggtggccgacgacaccgaaggcaaggcggcctggaacgaagcctgc
cggctgagcctggaaggcctgatctgcaagcgcctggacgcgccttaccggtccggccgc
tcgcagagctggctgaagctgaagtgccgcccgcgccaggaattcgtcatcggcggctat
accgaaccggccggcgcgcgccgccacctgggcgccttgctggtgggcctgcgcgaaggc
cgccaattgcgctatgcgggccgcgtgggtacgggcttcggcgcggccacgctgcgcacg
ctgggccagcggctggcggcgctgcgccaggatgccaagccgtttgcgggcgacgtgccg
cgcggccgcggcgacgccgccatacattgggtcagccccgagctggtggccgaagtgaat
tatgcgggcatcacgcgcgacggcctgctgcgccaggcttcgtttgccggcctgcgcgcc
gacaagcccgccagcgaagtgcgcggcgaggtggccgcgcggccgccggcggccaaggcg
gccacgccgtcgcgccgcgccggcgatggccgcgccgaggtggccggcgtgcgcatctcg
catccggaccggctggcctatcgcgagcccgactacaccaagctgcagctggccgagtac
tacgcggccatcggaccgcatatcctgccgcacctgcgccagcgccgcgtggccctgttg
cgctgtcccgacggcgccggcacgacctgcttcttccagaagcacctgagccaggcgctg
cctgccggcgtgcggcgcgacggcggacatctggtgatcgaatcgctgcccggcctgatc
gcgctggtgcagtatggcgccatcgagttccatacctggggcgccgatacccgccatccc
gacacgcccgaccggatcaccctggacctggaccccggccccggcgtggcgtggccggcc
attgtcgaaggcgcgcagatggcccgcctgctgatgcaggaagtcgggctggagccgttt
ctcaagacgaccggcggcaagggcctgcacctggtggcgccgctgcggcccacgcagccc
tgggacacggtcaaggatttcgcgcgcgcgctggcgcgccagctggccgtggccctgccg
gaccggttcaccgccaacatggccaaggcccggcgcgagcggcgcatcttcgtggactac
ctgcgcaacggcaacggcgccaccgcggtggccgccttctcggcgcgggcgcgcgacggc
gcgcccgtttccatgccgctgtcctgggacgcgctggacgccggcgacgatttgcgcggc
gcgcgctggaacatcgccaatgcgctggagcaggcccggcgcaaacccgacccctgggcc
gactacgccgccagccggcgcacgctgggtccgcgcatgcaggcgcggctgccgcgcgat
tga
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