Bifidobacterium breve 12L: B12L_0646
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Entry
B12L_0646 CDS
T03118
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbre
Bifidobacterium breve 12L
Pathway
bbre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B12L_0646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbre03400
]
B12L_0646
Enzymes [BR:
bbre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B12L_0646
DNA repair and recombination proteins [BR:
bbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B12L_0646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
CBS
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AHJ15412
LinkDB
All DBs
Position
809216..812830
Genome browser
AA seq
1204 aa
AA seq
DB search
MAAKAKTSDTQSSRGQAADSRTVHPDLINGSLAGILSELERDKTFLSLAAGDIEASDDVD
NSILAGVPEGLRPALAAAIAQGTNGNSGKPVVLVVASGREAEETVGSLRSWYDGDPNDIA
QLEAWETLPHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVVQD
LGDVEPLVFTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVR
IEFFGDEIDTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKALIGSIPNAEDM
LESIANAIPVEGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFL
AASWHVAASGHGAGAPISFDEASFLDYAETVSSLEYSEHPVVRLTSFGVDTTLAGHVQLD
AQNPAEFRGDEAKASQGIDGLLDAGFHVTITAAAAGTLARLKRALNTTGITTFDTIRSQA
IDGFVDNAAKIALLTERDLTGRSSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRF
VEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEVPKLNKL
GGSDWAATKAKARKHVHEIAEDLIKLYSARQRAKGFAFSPDTPWQKEMEDAFPYQETADQ
LATIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
QETFTDRFEGFPVNVAAMSRFQTTKEINETIEGLENGTVDVVIGTHKLLNPKIKFKDLGL
VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP
VLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDISSIADKIHTLVPEARVGIAHGKM
GEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGR
GRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSG
HIEGVGFDLYVRMVSEAVEKYKEPDEDVEPVSVSIDLPIEASIPIDYIDSDKLRLEAYRK
LASARNEADLKDLKEELTDRYGKPPVEFETLFDVSRLKFKARKLGVSEILAQSNRVRIGR
IDPPESIQMRMTRIYKGTQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAW
RPQR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggccgctaaggcgaaaacttccgacacgcagtcttcccgtggacaagcggcagacagc
cggaccgtgcatccggatctgatcaacggctcgcttgccggcatactgtccgaacttgag
cgggacaagacattcctgagcctcgccgcaggcgacatcgaagcttcggacgacgtcgac
aattccattctggccggtgtgcctgagggtcttcgcccggcactggccgcggccattgct
cagggcacgaacggcaactcaggcaagccggtggtgttggtcgtggcttccggccgcgaa
gccgaggaaaccgtgggatcgctgcgctcctggtatgacggcgacccgaacgatatcgcc
cagctcgaggcgtgggaaaccctgcctcacgagcgcctgagcccgcgcgcggacaccgtg
gccagccgtatggccgtgttccgcagactgaagcacccgagtgacgccaatccgatgttc
gggccgattcgcatccttgtcatgccgattcgctcgctgattcagccggtggtccaagac
cttggcgacgtcgaaccactcgtattcacggtaggggaggatctgccgcttgacgaggca
gccaagcgactcatcgaaaacgcctacacgcgcgtggaactggtcatggatcgcggcgaa
ttcgccgtgcgtggcggcatcctcgacgtgttcccacctaccgcgccgcacccggtgcgt
atcgaattcttcggtgacgaaatcgacactatcaaggaattccacgcttccgaccagcgc
acctatggcgaggggctcaaaaccatctgggccaccgcttgccgcgaactgcaattgacc
gatgccgtgcgcacccgtgccaaggccctgatcggttcgattcccaacgccgaagacatg
ctcgaatccatcgccaacgccattccggtcgaaggtatggaatctctgatgcccgcgctt
gtggatcacttggaaccggtgggctccatgctgcccaagcatgctgtggtgctgcttagc
gaccctgaaaaactacgccgttccgctgaagatctggccaaaaccgccaacgagttcttg
gccgccagctggcatgtggccgcatccggccacggcgccggcgcgcccatcagcttcgac
gaagccagtttccttgactatgcggagaccgtcagttcgcttgaatattcagagcatccg
gtagttcgtctcaccagtttcggtgtagacaccacactggccggccatgtgcagctcgac
gcgcagaatccagcggaattccgaggagacgaggctaaagcttcgcagggcatcgacggc
ctgttggatgctggcttccacgtcaccattaccgctgctgccgccggtaccttggctcgt
ctgaagcgtgcgctcaacaccaccggcatcaccacgttcgataccatccggtctcaggct
atcgatggattcgtggacaatgccgccaaaatcgccctgctcaccgaacgcgacttgacc
ggtcgaagctctgcggttgctgtggccaaaacgccgaaacgccggcgcaaggccatcgat
ttggtggaactcaaaaagggcgattatgtggtgcatgagcagcacggcatcggccggttc
gtggaaatgcgccagcgcaccattggcaccggcgccaacaagaccacccgtgaatacctg
gtcatcgaatacgcgccttccaagcgcggtgcaccggcggacaagctgttcatccccacc
gatcagcttgatcaggtcagcaaatacatcggtgccgaagtccccaagctcaacaaactc
ggcggctccgactgggcggccaccaaggccaaagcccgcaagcacgtccacgagattgcc
gaagacctgattaagctctactccgcccgtcagcgtgccaaaggttttgcgttcagtccg
gacactccatggcaaaaggagatggaggacgccttcccctatcaggagaccgcagaccag
ctcgccaccatcgacgaggtcaaatccgacatggaaaagcccgtgcccatggaccgtctt
atctgcggtgatgtgggcttcggcaaaaccgaaatcgccgtacgtgccgcattcaaagcc
gtacaggacggcaagcaggtggcggtgctcgtgcccaccactttgctcgttcaacagcat
caggaaaccttcaccgaccgctttgaaggattcccggtgaatgtggccgccatgagccgc
ttccaaaccaccaaggagatcaacgaaaccatcgaaggcctggaaaacggcacggtggac
gtggtcatcggcacacacaaactgctgaacccgaaaatcaagttcaaggatttgggactc
gtcatcatcgacgaggagcagcgtttcggcgtggaacacaaggaaacgctgaaagccctg
cgcaccaacgtggacgtgctgtccctgtccgccacgcctattccgcgtacgttggaaatg
gccgtgaccggcattcgtgagatgtccacgctcgccacaccgccagaagaccgtctgccg
gtacttacctatgtgggtgcctatgaggacgcgcaggtcaccgcagccgtgcgccgagaa
ctgctgcgcggcggccaggtgttctatgtgcacaaccgcgtgcaggacatctcgtccatc
gctgacaagattcacacgctggtgcccgaggcgcgcgtcggcatcgcccacggcaagatg
ggggagaagcagctcgaccagatcatccgcgacttctggcatcgcgacatcgacgtgctc
gtatgcaccacgatcatcgaaaccggtctcgatatctccaatgcgaacacgctgatcgtc
gaccatgccgaccgattcggtctgagccagcttcaccagttgcgtggccgcgtcggtcgt
ggccgcgaacgcgcctacgcctacttcctatatgacccgtccaagccgatgaccgagcag
tcacacgaccgactcgccaccattgcgcagaacacggcgctcggctccggcttcgacgtg
gccatgaaggatctggaactgcgcggcaccggcaacctgctgggtgacgagcagtccggc
catatcgagggcgtcggcttcgacctgtatgtgcgcatggtctccgaagccgttgaaaaa
tacaaggaacccgatgaggacgtcgagccggtgtccgtgtccatcgatctgcctatcgag
gcgtcgattccgattgactacatcgattccgacaagctgcgtttggaggcataccgcaag
ctcgcttccgcacgcaatgaagccgacctcaaggatttgaaagaagaactcaccgaccgt
tacggcaagcctccggtcgaattcgaaaccctcttcgacgtgtctcgcttgaagttcaag
gcgcgcaagctcggcgtttcggagattctggcgcaatccaaccgcgtgcgtatcggacgc
attgacccgcccgaatccattcagatgcgcatgacgagaatctacaagggcacccaatac
cgcccggtcactcaccagctcatcgtccccaccccgttcaccggctccctgggccaaggt
cccatgagttccgatcaagtagttctttggaccaatcagctcctcgatgacttggcatgg
aggccacaacgatga
DBGET
integrated database retrieval system
