Bifidobacterium breve 689b: B689b_0740
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Entry
B689b_0740 CDS
T03119
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbrv
Bifidobacterium breve 689b
Pathway
bbrv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbrv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B689b_0740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbrv03400
]
B689b_0740
Enzymes [BR:
bbrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B689b_0740
DNA repair and recombination proteins [BR:
bbrv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B689b_0740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
CBS
AroM
Motif
Other DBs
NCBI-ProteinID:
AHJ22781
LinkDB
All DBs
Position
906064..909654
Genome browser
AA seq
1196 aa
AA seq
DB search
MAVDAKTAADTGHNAHPDLINGSLVGVLSKLEQDKVFHQLAVGDIEVSDDVDNSILAGVP
EGLRPALAAAIAQGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETL
PHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVVQGLGDVEPLV
FTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEI
DTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKALIGSIPNAEDMLESIANAI
PVEGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFLAASWHVAA
SGHGAGAPISFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLAGHVQLDAQNPAEFR
GDEAKASQGIDGLLDAGFHVTITAAAAGTLARLKRALNTTGITTFDTIRSQAIDGFVDNA
AKIALLTERDLTGRSSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTI
GTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAAT
KAKARKHVHEIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVK
SDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFETFSERF
AGFPVNVAAMSRFQTTKEINETIEGLETGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQR
FGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAY
EDAQVTAAVRRELLRGGQVFYVHNRVQDISSIADKIHTLVPEARVGIAHGKMGEKQLDQI
IRDFWHRDIDVLICTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAY
FLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFD
LYVRMVSEAVEKYKEPDEDVEPVSVSIDLPIEASIPIDYIDSDKLRLEAYRKLASARNEA
DLKDLKEELTDRYGKPPVEFETLFDVARLKFKARKLGVSEILAQSNRVRIGRIDPPESIQ
MRMTRIYKGTQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWRPQR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggccgttgatgcgaagacggctgctgacacaggccacaacgcccatccggatctgatt
aacggctcgctcgtgggcgtcctgtccaagctcgagcaggacaaggtttttcatcaactg
gcggttggcgacatcgaagtgtcggatgatgtcgacaattccattttggccggtgttccc
gaaggattgcgtccggcattggccgccgcaatcgcccaaggcgtgaacggtggggcaggc
aagccggtcgtgctggttgtggcctccggccgtgaagccgaggaaaccgtgggatcgctg
cgctcctggtatgacggcgacccgaacgatatcgcccagctcgaggcgtgggaaaccctg
ccgcacgaacgattgagcccgcgcgcggacaccgtggccagccgtatggccgtgttccgc
agactgaagcacccgagtgacgccaatccgatgttcgggccgattcgcatccttgtcatg
ccgattcgctcgctgattcagccggtggtccaaggccttggcgacgtcgaaccgctcgta
ttcacggtaggggaggatctgccgcttgacgaggcagccaagcgactcatcgaaaacgcc
tacacgcgcgtggaactggtcatggatcgcggcgaattcgccgtgcgtggtggcattctc
gacgtgttcccacctaccgcgccgcacccggtgcgtatcgaattcttcggtgacgaaatc
gacactatcaaggaattccacgcttccgaccagcgcacctatggcgaggggctcaaaacc
atctgggccaccgcttgccgcgaactgcaattgactgatgccgtgcgcacccgtgccaag
gccctgatcggttcgattcccaacgccgaagacatgctcgaatccatcgccaacgccatt
ccggtcgaaggtatggaatctctgatgcccgcgcttgtggatcacttggaaccggtgggc
tccatgctgcccaagcatgctgtggtgctgcttagcgaccctgaaaaactacgccgttcc
gctgaagatttggccaaaaccgccaacgagttcctggccgccagctggcatgtggctgca
tccggccacggcgccggcgcgcccatcagcttcgacgaagccagtttccttgactatgcg
gaaaccatcagttcgctcgagtattccgagcacccggtgattcgcctgacgagtttcggt
gtagacaccacgctggccggccatgtgcagctcgacgcgcaaaacccagccgaattccgc
ggcgatgaagccaaggcctcacaaggaatcgacggcctgttggatgctggcttccacgtc
accattaccgctgctgccgccggtaccttggctcgtctgaagcgtgcgctcaacaccacc
ggcatcaccacgttcgataccatccggtctcaggctatcgatggattcgtggacaatgcc
gccaaaatcgccctgctcaccgaacgcgacctgaccggtcgaagctctgcggttgctgtg
gccaaaacgccgaaacgccggcgcaaggccatcgatttggtggaactcaaaaaaggcgat
tacgtggtgcatgagcagcacggcatcggccggttcatcgaaatgcgccagcgcaccatc
ggcaccggcgccaacaaaaccacccgcgaatacctggtcatcgaatacgcgccttccaag
cgcggtgcaccggcggacaaactgttcatccccaccgaccagctcgaccaggtcagcaaa
tacatcggtgccgaagcccccaagctcaacaaactcggcggctccgactgggcggccacc
aaggccaaggcccgcaagcacgtccatgagatcgccgacgacctaatcaagctgtactcc
gcccgccagcgcgccaaaggctttgcattcagcccagacaccccgtggcagaaagaactg
gaagacgccttcccctatcaggaaaccgccgaccagctcaccaccatcgacgaagtcaag
tccgacatggaaaagcccgtgcccatggaccgactcatctgcggcgacgtgggcttcggc
aaaaccgaaatcgccgtgcgcgccgcattcaaagccgtacaggacggcaagcaggtagcc
gtgctcgtgcccaccacgctgcttgtccaacagcatttcgagacgttcagcgaacgattc
gcaggtttcccggtcaacgtggcggccatgagccgattccagaccaccaaagagatcaac
gaaaccatcgaaggactggaaaccggcacggtggacgtggtcatcggtacgcacaagctg
ctgaacccgaaaatcaagttcaaggatttgggactcgtcatcatcgatgaggagcagcgt
ttcggtgtggaacacaaggaaacgctgaaagccctgcgcaccaacgtggacgtgctgtcc
ctgtccgctacgcctattccgcgtacgttggaaatggccgtgaccggcattcgtgagatg
tccacgctcgccacaccgcccgaagaccgtctgccggtgctgacctatgtgggtgcctat
gaggacgcgcaggtcaccgcagccgtgcgccgagaactgctgcgcggcggccaggtgttc
tatgtgcacaaccgcgtgcaggacatctcgtccatcgctgacaagattcacacgctggta
cctgaggcgcgcgtcggcatcgcccacggcaagatgggggagaagcagctcgaccagatc
atccgcgacttctggcatcgcgacatcgacgtgctcatatgcaccacgatcatcgaaacc
ggtctcgatatctccaatgcgaacacactgatcgtggaccatgccgaccgattcggtctg
agccagcttcaccaattgcgtggccgcgtgggccgtggccgcgaacgcgcctacgcctac
ttcctgtatgacccgtccaagccgatgaccgagcagtcgcacgaccgactcgccaccatc
gctcagaacacggccctcggctccggtttcgacgtggccatgaaggatctggaactgcgc
ggcaccggcaacctgctgggtgacgagcagtccggccatatcgaaggcgtgggcttcgac
ctgtatgtgcgcatggtctccgaagccgttgaaaaatacaaggaacccgatgaggacgtc
gagccggtgtccgtgtccatcgatctgcctatcgaggcgtcgattccgattgactacatc
gattccgacaagctgcgtttggaggcataccgcaagctcgcttccgcacgcaatgaagcc
gacctcaaggatttgaaagaagaactcaccgaccgttacggcaagcctccggtcgaattc
gaaactctcttcgacgtggctcgcttgaagttcaaggcgcgcaagctcggcgtttcggag
attctggcgcaatccaaccgcgtgcgtatcggacgcattgacccgcccgaatccattcag
atgcgcatgacgagaatctacaagggcacccaataccgcccggtcactcaccagctcatc
gtccccaccccgttcaccggctccctgggccaaggtcccatgagttccgatcaagtagtt
ctttggaccaatcagctcctcgatgacttggcatggaggccacaacgatga
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