Brettanomyces bruxellensis: BRETT_003048
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Entry
BRETT_003048 CDS
T07183
Symbol
SSL1
Name
(RefSeq) transcription initiation factor TFIIH subunit
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03022
Basal transcription factors
bbrx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BRETT_003048 (SSL1)
09124 Replication and repair
03420 Nucleotide excision repair
BRETT_003048 (SSL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbrx03021
]
BRETT_003048 (SSL1)
03400 DNA repair and recombination proteins [BR:
bbrx03400
]
BRETT_003048 (SSL1)
Transcription machinery [BR:
bbrx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BRETT_003048 (SSL1)
DNA repair and recombination proteins [BR:
bbrx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BRETT_003048 (SSL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
64574972
NCBI-ProteinID:
XP_041139355
LinkDB
All DBs
Position
9:2839412..2840920
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AA seq
502 aa
AA seq
DB search
MPLDPEEENIVTPAGRHRSKERASIINDDENEQDYLDSTDKYDNSQHIETSRNSNEGNDD
HDAPEQLKGNNGGYSWEDEYRRSWDIVQEDESGSLETIVSGLVESQKKRYLKDTTPFQRG
IIRVNVLVLDYSKVMREKDLRPNRAAMMISYAIDFVNEFFDQNPISQLSVVIMRNGLAQI
VSEVSGNPHDHIEALKKLKKTDPEGDPSLQNALEMSRGLLLHVPSHCTREVLIIFGALFT
SDPGNIHSTIQGLVQEKISVRVIGLTARVAICDELCRLTNHGDLKNSYNVILNEQHFKEL
FMDAVTPLAITKTESQNKRGFSLVKMGFPQRVSEQSPSFCACHSRLVYGGYICPNCKSKV
CVLPTVCPCCNLTLILSTHLARSYHHLFPLTLFVEVPISSSYPTNTCFGCHVRFPKGVEP
SWRATDSHKRKKEIQSSSRYRCTLCGCDFCIDCDVFIHEVLHNCPGCESRSRNHKLSASK
QLTSKDLIDSEKNRIHIHNINS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgccgttagatccggaagaagagaatattgttacgccagctggaaggcacagaagcaag
gagcgtgcttccattatcaatgatgacgaaaatgagcaggattatttggatagtacagat
aagtatgataattcacaacacatagaaacaagcaggaattcaaatgagggtaatgatgat
cacgatgcgcctgaacagctgaagggaaataacggtggatattcttgggaagatgaatat
cgtagatcgtgggatatagtgcaagaggatgagagtggaagtttagaaacgattgtttcc
ggacttgttgagtcacagaagaaaagatatttgaaagatactacaccttttcaacgtgga
attatccgtgtaaatgttcttgttttagattactctaaagtcatgcgagaaaaagattta
cgccctaatagagcagcgatgatgatatcatacgccattgattttgttaatgaatttttt
gatcagaaccctatatctcagctcagtgtggtgatcatgcgcaatggattagcccagatc
gtttctgaagtcagtggaaatccgcatgatcacatagaggcgctaaagaaattaaaaaag
acagatccggagggagatccatcgctccaaaatgcgttggaaatgtcacgaggtcttctt
cttcatgttccgtctcactgcaccagggaagttttgattatatttggagcattatttacg
tcggaccctggaaatattcattcaaccattcagggattggtacaagagaagatcagcgta
cgagtcattggcttgactgcgagagttgctatttgtgatgaactttgtagactgacaaat
catggagatttgaaaaactcatacaatgttatattaaatgagcaacattttaaagagttg
ttcatggatgctgtcactcctttggcaattacgaaaaccgagtcacaaaataagcgagga
ttttcattagttaagatgggttttccacaaagagtcagtgaacagagccctagtttttgc
gcatgtcattcaagattggtatatggagggtacatatgtccaaactgcaaaagtaaagta
tgtgtcttacctacagtttgtccctgttgtaacctaacgctcattctttcaactcatctc
gcgcgttcatatcatcatttatttcctttgacgctttttgtcgaagtaccaatctcctca
tcatatccgacaaatacttgttttggttgtcacgtcagatttccgaaaggtgttgaaccg
tcgtggcgtgcgactgactctcataaacgcaaaaaggaaattcaatcaagttccagatac
cgttgtaccttgtgtggctgtgatttttgtattgattgcgatgttttcatacatgaggtt
ttacataactgtccaggctgtgaatcccgaagtaggaatcataaactaagtgcgagtaaa
caattaacgagcaaagatttaatcgattctgaaaagaatcggattcatattcataatata
aatagttaa
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