KEGG   Brettanomyces bruxellensis: BRETT_004504
Entry
BRETT_004504      CDS       T07183                                 
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bbrx  Brettanomyces bruxellensis
Pathway
bbrx03030  DNA replication
bbrx03410  Base excision repair
bbrx03420  Nucleotide excision repair
bbrx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbrx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BRETT_004504
   03410 Base excision repair
    BRETT_004504
   03420 Nucleotide excision repair
    BRETT_004504
   03430 Mismatch repair
    BRETT_004504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbrx03032]
    BRETT_004504
   03400 DNA repair and recombination proteins [BR:bbrx03400]
    BRETT_004504
Enzymes [BR:bbrx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BRETT_004504
    6.5.1.6  DNA ligase (ATP or NAD+)
     BRETT_004504
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BRETT_004504
DNA replication proteins [BR:bbrx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    BRETT_004504
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     BRETT_004504
DNA repair and recombination proteins [BR:bbrx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BRETT_004504
   NER (nucleotide excision repair)
    Other NER factors
     BRETT_004504
   MMR (mismatch excision repair)
    Other MMR factors
     BRETT_004504
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase CoV_nucleocap DUF4135
Other DBs
NCBI-GeneID: 64576427
NCBI-ProteinID: XP_041135776
LinkDB
Position
5:complement(1091307..1093658)
AA seq 783 aa
MPSQQQTLTQFFNFSSSSHNLAPKDKDISIKRGRSVHKDESLKSSSAKKTSSDGETKSRS
RSRSRSRSRSKSKSRSRSVSRTGSPSRKKPKKEPLNEESDVEMVDDAPESNISRLDKEIE
IHKTKNELKDAKNLLRIDQEVHKTKSPTKILPDKPIPYATLCSVFEKLEQESGRLKNLAI
ASEFFCDILRKSSSEKTLTADGAVAKNLIEVTYLMINRLGPDYEPDLELGLGETLLLKAL
AQSTGRELQHIRKDYHRLGDIGEVAFISRTKQSLIFKPKPLSIPEVFQNLTKIAKSMGNS
SQSKKIAIINKMLAACEDQEAKFLMRSLEGKLRINFGEKSVLMGLAKAFVEYETGEKSSD
DVDPEALVKAEQQMKEAYSETPNYELIIKNCIKYGVSHVSEHCTLKPGIPVKPMLARPTK
SIAEIMDTMEGKEFTCEYKYDGERAQVHLLPDGDMRVYSRNSENMTERYPDLIPVIEELR
KENPEIKSLILDSECVAWDTEEHKILPFQTLSTRKRKGVQEKDIKVKVCLFVFDLLFYNG
EPIINKPLDQRRELLFKHIHEVPEKLRFATKMNSTDVKEMEKFLDESVHDSCEGLMIKAL
HGEDACYRPAKRSKNWLKLKKDYLEGVGDSLDLVVIGGYIGKGKRTGWYGGFLLASYNQD
TGEYESVCKIGTGFSEDLLMDLAKQLKPKEISEPKSFFVYNRENPNATPDVWFEPSLVFE
VRVADLTTSPIYMSGASYFGDGEKGISLRFPRFVQIRTDKGTEDATSSEQIVEMYERQAV
RQS
NT seq 2352 nt   +upstreamnt  +downstreamnt
atgccctcacaacagcaaacattaactcaattcttcaacttctcatcttcgagtcataat
ctggcccccaaagataaggatataagtattaagcgtggacgttccgtacacaaggatgaa
agtttgaaaagttcgtctgcaaagaaaacatcttctgatggagagacaaaatctaggtct
aggtctaggtcaagatccagatctagatcgaaatccaagtctaggtccagatctgtaagc
agaacgggttcgccttccaggaagaaaccaaaaaaagaacctttgaacgaggaatctgat
gtggaaatggttgatgatgcacccgagtcaaacatttcacgattagataaagaaattgag
atacacaagacaaaaaacgagctcaaagatgctaaaaatcttctccgtattgatcaggag
gttcacaaaactaagagtccaacaaaaatattgcccgataaaccaattccatatgccact
ttatgtagtgtgtttgaaaaactagagcaagagtctggccgtttgaagaatcttgcgatt
gcctctgaattcttttgcgatatcttgagaaagtcttccagtgaaaaaacgctcacggct
gacggggctgttgccaaaaatcttatagaagtcacttatctcatgatcaatcgacttggt
ccagactatgaaccagacttagagttgggactaggcgagacattacttttgaaggctttg
gcccaaagtacaggtagggagctgcaacatataagaaaggactatcatcgtcttggagat
ataggtgaggttgcttttatttcaagaacaaagcagtcattaatatttaaaccaaaacca
ttaagtattccagaggttttccagaatttaaccaaaatagcaaaatctatgggtaattct
tcgcagtcaaagaaaatcgcaattattaacaagatgcttgcagcttgtgaagaccaggaa
gcaaagtttctaatgagatctcttgagggtaaacttaggataaactttggtgagaagtct
gtgcttatggggttagcgaaagcatttgttgaatatgaaacaggtgaaaagtcttcagat
gatgtggatccggaggctttggttaaagctgagcaacaaatgaaggaagcttactctgag
actccaaattatgagttgattataaagaactgcatcaaatatggcgtgtctcatgtgtca
gagcattgtacacttaagccgggaataccagttaagccgatgcttgctcgccctacaaaa
tctattgcagagatcatggatacaatggagggtaaagaatttacctgtgagtataaatac
gatggagaacgtgctcaagttcatctattaccagacggtgacatgagagtttattccaga
aattcggaaaatatgacggagagatatccagatttaattccagttattgaggagctcaga
aaggaaaacccagaaataaagtctttgatcttggattcagaatgtgttgcatgggataca
gaagaacataaaatacttccattccaaacattgtcaacgaggaagagaaagggcgttcaa
gagaaggatattaaagttaaagtgtgcttatttgtcttcgatcttttattttacaacggc
gaacccattataaataagccattggatcaacgtagagaattgttgttcaagcacattcat
gaagttccagagaagcttagatttgccacaaaaatgaattcaacggatgtgaaagaaatg
gagaaattcttggatgagtctgttcatgattcatgtgagggtttgatgatcaaagcatta
catggagaagatgcatgctacagacccgcaaagaggtctaaaaactggcttaaattgaaa
aaggattatcttgaaggagtgggagattctctagatcttgttgttattggtggatatata
ggaaaaggtaagagaacaggatggtatggaggctttttgttggcatcatataaccaagat
acgggtgagtatgaatcggtgtgtaaaattggcactggtttcagtgaagatcttttaatg
gacttggcaaaacagttgaaaccgaaggaaatttcagaaccaaaatcattttttgtttac
aacagggaaaatccaaatgccactccagacgtttggtttgaaccatcattggtctttgag
gttagagtcgcagatttaactacttctccaatatatatgagtggagcatcttactttggt
gacggagaaaagggtatctccttaaggttcccaagatttgttcagatcagaacagataag
ggaactgaagatgctacaagtagtgaacaaattgtggagatgtatgagagacaagcagtc
agacaatcttga

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