Bubalus bubalis (water buffalo): 102391411
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Entry
102391411 CDS
T05912
Symbol
SCN10A
Name
(RefSeq) sodium channel protein type 10 subunit alpha isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bbub04040
]
102391411 (SCN10A)
Ion channels [BR:
bbub04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102391411 (SCN10A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
Na_trans_cytopl
GPHH
CcmD_alt
IQ
Sarcoglycan_1
Motif
Other DBs
NCBI-GeneID:
102391411
NCBI-ProteinID:
XP_044789427
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All DBs
Position
21:complement(12085269..12141107)
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AA seq
1636 aa
AA seq
DB search
MTQDSWERLYQQTLRASGKIYMVFFVLVIFLGSFYLVNLILAVVTMAYEEQNRATIDEIE
AKEKTFQEALKMLRTEQEVLAALGVDTASLQSHNGSPLASKTASEGKHRMKSRVSEGSTD
DNKSLRSESYNQHRTSFLGLTTGRRRASHGSVFHFQAPGRDISFPDGVTDDGVFPGDHES
HHGSLLMLRGASQQGPLPRSPLPQTLNHGSGRGEDGAPKMTTGELAPGVVEVSASDAGQK
TFLTADYLNEPFRVQRAMSVVSIMTSVLEELEESKQRCPPCLTSLAQKYLIWDCCPTWVK
LKTLLFAIVMDPFAELTITLCIVVNTVFMAMEHYGMSPAFEAMLQIGNIVFTVFFTAEMV
FKIIALDPYYYFQKKWNMFDCIIVTVSLIELGAARKGSLTVLRTFRLLRVFKLAKSWPTL
NTLIKIIGNSVGALGNLTIILAIIVFIFALVGKQLLGENYCQKRKKISAPNEDWPRWHMY
DFFHSFLIVFRILCGEWIENMWACMEVGQKSICLILFLTVMVLGNLVVLNLFIALLLNSF
SADNLTPPEDDGEVNNLQVALARIQVFGQHTKRALCSFLSRPCLLPWSKAKPQLVVKIPL
STSIAKNHIAAEGALGSPGRLPALRSPRDDPGDFITDPNIWVSVPIAEGESDLDDLEENG
EEDAQSTRQEVIPQRQEQLQQVGKYEDRLPPRTPGSGISSEDLTPGLGEKCKGEAPAQGP
AEIHGAPWRAGFTAGAFALQGADDTSSSEGSTVDFLDPEEILRKIPELADDLDEPDDCFT
EGCVHHCPCCRVNTSRFPWATGWQVRKACFRIVEHSWFESFIVFMILLSSGALVFEDVYL
DQKPTVKALLEYTDRVFTFIFVFEMLLKWVAYGFKSYFTNAWCWLDFLIVNISLTSLIAK
ILQYSDMASIKALRTLRALRPLRALSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFS
IMGVNFFAGKFQKCINKTNEGFLLVPWSTVNNMSDCERQNHTGSLFWVNVKVNFDNVAMG
YLALLQVATFKGWMDIMYAAVDSRDVNLQPKWEDNVYMYFYFVIFIIFGGFFTLNLFVGV
IIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFVFDIVTRQ
TFDIVIMVLICLNMITMMVETDEQSEEKTKVLNKINQFFVAVFTGECVMKMFALRHYYFT
NGWNVFDFVVVVLSIGSLVFSAIVSSLGSLFSPTLFRVIRLARIGRILRLIRGAKGIRTL
LFALMMSLPALFNIGLLLFLVMFIYSIFGMASFAYVKWEAGIDDMFNFQTFANSMLCLFQ
ITTSAGWDGLLSPILNTGPPYCDPNLTINNSTRGDCGSPVMGIIFFTTYIIISFLIVVNM
YIAVILENFNVATEESTEPLSEDDFDMFYETWEKFDPEATQFITFSALSDFADTLSGPLR
IPKPNRNVLIQMDLPLVPGDKIHCLDILFAFTKKVLGESGELDSLKANMEEKFMATNLSK
ASYEPIATTLRWKQEDISATVIQKAYRSYMQHRARTIASPVGVPRAEEEAASLPEEGFAA
LVANENCALPDKSETASTTSFPPSYDSVTRGLSGQVNLSTSSSMQNEGEAVSREAAGPSC
GPSSVGMSSSDVPAAL
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggattcctgggaacgcctctaccagcagaccctgagggcttctgggaaaatc
tatatggtttttttcgtgcttgttatcttcctggggtctttctacctggtcaatttgatc
ttggctgtggtcactatggcatatgaggagcagaaccgggcaaccattgatgaaattgaa
gccaaggagaagacgttccaggaggccctgaagatgctccggacagagcaggaggtgctg
gcagcgctgggggtcgacacagcctctctccagtctcacaatggatcccccttggcctcc
aaaactgccagtgaaggaaaacacagaatgaagtcaagggtgtcagagggctccacagac
gacaacaagtcactccggtctgagtcttacaaccagcaccgaacgtctttcctaggcctc
accactgggagacgccgggctagccatggcagtgtgttccatttccaggcccctggccga
gacatctcattccctgatggggtcacagatgatggagtctttcctggagaccatgaaagc
catcatggctctctgctgatgcttaggggtgcaagccagcaaggccccctccctaggagt
ccactgcctcaaaccctcaaccatggctcagggcgtggagaagatggagctcccaaaatg
accactggagagcttgcccctggagtcgtcgaagtctcggcatctgatgcaggacagaag
actttcctaacagcagactacttgaatgaacctttccgagtccaaagggcaatgagcgtt
gtcagtatcatgacctctgtcctcgaggaactggaggagtctaaacagaggtgcccaccc
tgcttgaccagcttggctcagaagtatcttatctgggattgctgccccacatgggtgaag
ctcaagacgcttctcttcgcaattgtgatggacccctttgcagagctcaccatcaccctg
tgcatcgtggtgaacaccgtcttcatggccatggagcactatggcatgagccccgccttc
gaagccatgctccagattggcaacattgtgtttaccgtgttttttactgctgaaatggtc
ttcaaaatcatagccttggacccctactattacttccagaagaagtggaacatgtttgac
tgcatcattgtcaccgtgagcctgatagagctgggcgcggcccggaaggggagcctgacg
gtgctgcggaccttccgcctgctgcgggtcttcaagctggccaagtcctggccaacctta
aacacgctcatcaaaatcatcggcaactcggtcggggctctggggaacctcaccatcatc
ctggccatcattgtcttcatctttgctctggttggcaagcagctcctgggggaaaactac
tgccaaaagcggaaaaaaatttcggcacccaacgaagattggccacgctggcacatgtac
gacttcttccactccttcctcatcgtcttccggatcctctgtggagagtggattgagaac
atgtgggcctgcatggaagttggccagaagtctatctgcctcatccttttcttgacagtg
atggtactgggcaacctggtggtgcttaacctgttcatcgccctgctgctgaactccttc
agtgccgacaacctcacaccacctgaggacgacggtgaggtgaacaacctgcaggtggcc
ttagcgaggatccaggtgtttggccagcacaccaagagggctctttgcagtttcctcagt
cggccctgcttgctcccctggtccaaggcaaagccccagttggtggtgaaaatcccactt
tccacctccatagccaagaaccacattgctgctgagggagccctggggagccccggacgg
ctcccggctctcagaagccccagggacgaccccggtgacttcatcacggatcctaacata
tgggtctctgtgcccattgctgagggcgaatccgacctggatgacttggaggagaatggt
gaggaggatgctcagagcaccaggcaggaagtgatcccccaaaggcaggagcagctgcag
caagttgggaagtatgaggaccgcctgccacccaggaccccagggtctggaatatcctct
gaagacctgactccaggcctaggtgagaagtgcaaaggcgaggctcctgctcagggccct
gcagagattcacggggccccgtggagagctgggttcactgctggggcttttgccctgcag
ggagcagacgacacgagctcctcggaaggcagcactgtggacttcctggaccccgaggag
atcctgaggaagatccctgagctggcagacgacctcgatgagccagatgactgcttcacg
gaaggctgtgttcaccactgtccctgttgcagagtgaacacctccaggtttccctgggcc
acaggctggcaggtacgcaaggcctgctttcgcatcgtggagcacagctggtttgaaagt
ttcattgtcttcatgatcctgctcagcagtggagcgctggtctttgaagatgtttacctt
gaccagaagcccacagtaaaggccttgctggagtacaccgacagggtgttcacgttcatc
tttgtgtttgagatgctgctcaaatgggtggcctatggctttaagagttacttcaccaat
gcctggtgctggctggacttcctgatcgtgaacatctcattgacaagcctcatagcgaag
atcctgcagtattctgatatggcatccatcaaagcccttcggaccctccgtgccctgcgg
ccactgcgggctctgtctcgatttgaaggcatgcgggtggtggtagatgccctggtgggt
gccatcccatccatcatgaatgtcctactcgtctgcctcatcttctggctcatcttcagc
atcatgggcgtgaacttctttgcggggaagtttcagaaatgcatcaacaagaccaatgaa
ggctttcttctcgtgccttggtctactgtgaataacatgtctgactgtgaacgtcaaaac
cacactggaagcttattttgggtcaatgtgaaggtcaactttgataatgttgcaatgggc
tacctcgcgcttctgcaggtggcaacctttaaaggctggatggacatcatgtatgcggct
gtcgattcccgggatgtgaacctgcagcccaagtgggaggacaacgtgtacatgtacttt
tactttgtcatcttcatcatttttggcggcttcttcacactcaatctctttgttggcgtc
atcattgacaacttcaaccaacagaaaaaaaagttagggggccaggacatcttcatgaca
gaggagcagaagaagtactacaatgccatgaagaagctgggctccaagaagccccagaag
cccataccacggcccctgaataagtaccagggttttgtctttgacatcgtgaccaggcag
acttttgacatcgttatcatggtcctcatctgcctcaacatgatcaccatgatggtggag
actgatgagcagagtgaagaaaagacaaaagtcctgaacaaaatcaaccagttctttgtg
gccgtcttcacgggagagtgtgtcatgaagatgtttgccttgagacattactacttcacc
aacggctggaatgtgtttgacttcgtcgtcgtggtcctctccattgggagcctggtgttc
tctgcaattgtttcgtcacttggaagtttattctccccgacgctcttccgtgtcatccgc
ctggcccgcatcggccgcatcctcaggctgatccgtggggccaagggcatccgcacgctg
ctcttcgccctcatgatgtccctgcccgcgctcttcaacatcgggctgctgctcttcctc
gtcatgttcatctactccatcttcggcatggccagctttgcctacgtcaagtgggaggcc
ggcattgacgacatgttcaacttccagaccttcgccaacagcatgctgtgcctcttccag
atcaccacgtcagcgggctgggacgggctcctcagccccatcctcaacacggggcccccc
tactgcgaccccaacttgaccatcaacaacagcaccagaggggactgcgggagccccgtc
atgggcatcatcttcttcaccacctacatcatcatctccttcctcattgtggtcaacatg
tacatcgcagtgattctggagaacttcaatgtggccacagaggagagcacggagcccctg
agtgaggacgactttgacatgttctacgagacgtgggagaagtttgacccagaggccact
cagttcatcaccttctctgccctctcagactttgcagacaccctgtctggccccctgaga
atccccaaacccaatcggaatgtattaatccagatggacctgcccttggtccctggagat
aagatccactgtttggacatcctgtttgccttcaccaagaaagtcctgggagaatctggg
gagttggattccctgaaggcaaatatggaggagaaatttatggcaactaatctttcaaaa
gcatcctatgaaccaatagcaaccaccctccgatggaagcaagaagacatctcagccact
gtcatccaaaaggcctatcggagctacatgcagcaccgcgccaggacaatcgccagccct
gtgggggtgcccagggctgaggaggaggcagcatcactccccgaggaaggctttgctgca
ctcgtagcaaatgagaactgtgcgctcccagacaaatctgaaactgcttccaccacatct
ttcccaccgtcctacgacagtgtcactagaggccttagtggtcaagtcaacttgagcaca
tccagctcaatgcaaaatgaaggggaggctgtcagtagagaagccgctgggccctcatgt
ggaccctccagcgtgggcatgtccagttctgatgtgccggctgctctgtga
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integrated database retrieval system
