KEGG   Bubalus bubalis (water buffalo): 102399221
Entry
102399221         CDS       T05912                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
bbub  Bubalus bubalis (water buffalo)
Pathway
bbub03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102399221 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbub03400]
    102399221 (LIG4)
Enzymes [BR:bbub01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102399221 (LIG4)
DNA repair and recombination proteins [BR:bbub03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102399221 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme ATG17_like
Other DBs
NCBI-GeneID: 102399221
NCBI-ProteinID: XP_006056294
EnsemblRapid: ENSBBUG00015006776
LinkDB
Position
13:3540593..3548456
AA seq 911 aa
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKAFLDSWRKFHDALHRNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLSIQQVNDILDSIASNNSAKRKDLMKKSVLQLITQSSA
LEQKWLIRMIVKDLKLGFSQQTIFSVFHSDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYVD
QFGASPQEGSLTPFIHNAFKTEVLNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSEL
QTCYCVFDVLMVNDKKLGHETLRKRYEILNSVFTPVPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIIGGYWGKGARGGMM
SHFLCAVAEKPLSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPSNILC
GTEKPEVYIEPCNSVIVQVKATEIVPSDMYKTGCTLRFPRIEKIREDKEWYECTSLEDLE
QLRGKACGKLASRHLYMGGDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLSNINRVSTVFE
DVEFCVMSGTSSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPEWLLECFRTRSCVPWQPRFMIHMCPSTKQHFAQEYDQYGDSYFVDTDLHQLKEVFSG
IKNAGEQTPGEMSPVIADLEHRYSWASAPLSMFRHHTVYLDLYAVINDLSTRIKGARLAI
TALELRFHGAQVVSCLAEGVSHVIVGEDQSRVADLKAIRRTLKRKFKILQERWVTVSIDK
CELQEENRYLV
NT seq 2736 nt   +upstreamnt  +downstreamnt
atggctgcctcacaaacctcacaaactgttgcatctcatgttccttttgcagatttatgt
tcgactttagaacgaatacagaaaagtaaagggcgtgcagaaaaaatcagacacttcaaa
gcatttttagattcttggagaaaatttcatgatgcccttcataggaaccaaaaagatgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagagagagaatg
gcctatggaatcaaagaaactatgctggctaagctttatattgaattgcttaacctgcct
cgagatggaaaagatgcccttaaacttttgaactacagaacaccgaccggaacccgtgga
gatgctggagactttgcaatgattgcgtactttgtactgaaacccaggtgtctacagaaa
ggaagcctaagcattcagcaagtaaatgacattttagactccattgccagcaataattct
gccaaaaggaaagacctaatgaagaagagtgttcttcagcttataactcagagttcagca
cttgaacaaaagtggctgatacggatgattgttaaggacctaaagcttggctttagtcag
caaactatattttctgtttttcacagtgatgctgccgagttgcataatgtcaccacagat
ctggagaaggtctgtaggcaactgcacgatccttcagtgggactcagtgacatttccatc
accttattctctgcctttaaacctatgctggccgctatagcagatatcgagcggattgag
aaggacatgaaacatcagagtttctacatcgaaaccaagctggatggcgagcggatgcag
atgcacaaggatggggatgtgtaccggtacttctctcgcaatgggtataactatgtagac
cagtttggtgcttccccacaggaagggtccctcacaccattcattcataatgcattcaaa
acagaagtgctgaactgtatcctcgacggtgagatgatggcctacaaccctaacacacag
acttttatgcaaaaggggaataagtttgatattaaaagaatggtagaagattctgagctg
cagacttgttactgtgtttttgatgtgttgatggttaatgataaaaagctaggacatgag
accctgagaaagaggtatgaaattcttaatagtgttttcacacctgtaccaggtagaata
gaaatagtgcagaaaacacaagctcatactaagaaagaagtaattgatgctttgaatgaa
gcgatagataaaagagaagaggggatcatggtaaaacacccgctgtccatttacaagccc
gataaaagaggtgaaggatggttaaaaattaaaccagagtatgtcaatggactgatggat
gagctggacatcttaatcatcgggggctactgggggaagggtgcccggggcgggatgatg
tctcattttttgtgcgctgtggcagagaagcccctttctggtgaaaaaccctcagtgttt
catactctgtgccgtgtgggctcgggttacaccatgaaagaactgtatgacctgggtttg
aagttggccaaacactggaagccttttcataggaaagccccaccaagcaacattctatgt
ggaacagagaagccagaggtctacatcgagccttgcaattcagtcattgttcaggttaag
gccacagagatcgtccccagtgacatgtataaaaccggctgcacgttgcgttttccacgg
atcgagaagataagagaagacaaagaatggtacgaatgtacatccctggaggacttagag
caacttcgagggaaagcctgtggaaagctcgcgtccagacacctttacatgggtggcgat
gatgaaccacaagagaaaaagaggaaagctgccccaaagatgaagaaagtcattggaatt
attgagcacctaaaagctcccaacctttctaacataaacagggtttctactgtgtttgaa
gatgtggagttttgtgtcatgagtggaaccagcagccatcccaagcctgacctggagaac
agaatcgccgaattgggtggttacatagtacagaacccaggcccagacacgtactgtgtg
atcgcagggtctgagaacattcgagtgaagaatatcatctcttcagataaacatgatgtc
gtcaagccagagtggctgctagagtgttttaggaccagaagctgtgtgccctggcaaccc
cgcttcatgatccacatgtgcccgtcgacaaagcagcacttcgcccaggaatacgaccaa
tacggggatagttactttgttgacacagatttgcaccaactgaaggaagtgttttcggga
attaaaaatgctggtgagcagactcctggggagatgagtcctgtgattgctgatttggaa
cacaggtattcctgggccagcgcgcctcttagcatgtttagacaccacaccgtttatttg
gacttgtacgctgtcatcaatgacttaagtaccagaatcaagggagctaggttagccatc
acagccttggagcttcgatttcatggagcgcaagtagtttcctgtttagctgagggagtg
tctcacgtgattgttggggaggatcagagtcgggttgcagacttgaaagctattcgaagg
actcttaagaggaaatttaaaatcttacaagaacgttgggtcactgtttcaatagacaag
tgtgaattacaggaggaaaatcggtatttggtttga

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