Bubalus bubalis (water buffalo): 102399221
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Entry
102399221 CDS
T05912
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102399221 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102399221 (LIG4)
Enzymes [BR:
bbub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102399221 (LIG4)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102399221 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
102399221
NCBI-ProteinID:
XP_006056294
EnsemblRapid:
ENSBBUG00015006776
LinkDB
All DBs
Position
13:3540593..3548456
Genome browser
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKAFLDSWRKFHDALHRNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLSIQQVNDILDSIASNNSAKRKDLMKKSVLQLITQSSA
LEQKWLIRMIVKDLKLGFSQQTIFSVFHSDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYVD
QFGASPQEGSLTPFIHNAFKTEVLNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSEL
QTCYCVFDVLMVNDKKLGHETLRKRYEILNSVFTPVPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIIGGYWGKGARGGMM
SHFLCAVAEKPLSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPSNILC
GTEKPEVYIEPCNSVIVQVKATEIVPSDMYKTGCTLRFPRIEKIREDKEWYECTSLEDLE
QLRGKACGKLASRHLYMGGDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLSNINRVSTVFE
DVEFCVMSGTSSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPEWLLECFRTRSCVPWQPRFMIHMCPSTKQHFAQEYDQYGDSYFVDTDLHQLKEVFSG
IKNAGEQTPGEMSPVIADLEHRYSWASAPLSMFRHHTVYLDLYAVINDLSTRIKGARLAI
TALELRFHGAQVVSCLAEGVSHVIVGEDQSRVADLKAIRRTLKRKFKILQERWVTVSIDK
CELQEENRYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacctcacaaactgttgcatctcatgttccttttgcagatttatgt
tcgactttagaacgaatacagaaaagtaaagggcgtgcagaaaaaatcagacacttcaaa
gcatttttagattcttggagaaaatttcatgatgcccttcataggaaccaaaaagatgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagagagagaatg
gcctatggaatcaaagaaactatgctggctaagctttatattgaattgcttaacctgcct
cgagatggaaaagatgcccttaaacttttgaactacagaacaccgaccggaacccgtgga
gatgctggagactttgcaatgattgcgtactttgtactgaaacccaggtgtctacagaaa
ggaagcctaagcattcagcaagtaaatgacattttagactccattgccagcaataattct
gccaaaaggaaagacctaatgaagaagagtgttcttcagcttataactcagagttcagca
cttgaacaaaagtggctgatacggatgattgttaaggacctaaagcttggctttagtcag
caaactatattttctgtttttcacagtgatgctgccgagttgcataatgtcaccacagat
ctggagaaggtctgtaggcaactgcacgatccttcagtgggactcagtgacatttccatc
accttattctctgcctttaaacctatgctggccgctatagcagatatcgagcggattgag
aaggacatgaaacatcagagtttctacatcgaaaccaagctggatggcgagcggatgcag
atgcacaaggatggggatgtgtaccggtacttctctcgcaatgggtataactatgtagac
cagtttggtgcttccccacaggaagggtccctcacaccattcattcataatgcattcaaa
acagaagtgctgaactgtatcctcgacggtgagatgatggcctacaaccctaacacacag
acttttatgcaaaaggggaataagtttgatattaaaagaatggtagaagattctgagctg
cagacttgttactgtgtttttgatgtgttgatggttaatgataaaaagctaggacatgag
accctgagaaagaggtatgaaattcttaatagtgttttcacacctgtaccaggtagaata
gaaatagtgcagaaaacacaagctcatactaagaaagaagtaattgatgctttgaatgaa
gcgatagataaaagagaagaggggatcatggtaaaacacccgctgtccatttacaagccc
gataaaagaggtgaaggatggttaaaaattaaaccagagtatgtcaatggactgatggat
gagctggacatcttaatcatcgggggctactgggggaagggtgcccggggcgggatgatg
tctcattttttgtgcgctgtggcagagaagcccctttctggtgaaaaaccctcagtgttt
catactctgtgccgtgtgggctcgggttacaccatgaaagaactgtatgacctgggtttg
aagttggccaaacactggaagccttttcataggaaagccccaccaagcaacattctatgt
ggaacagagaagccagaggtctacatcgagccttgcaattcagtcattgttcaggttaag
gccacagagatcgtccccagtgacatgtataaaaccggctgcacgttgcgttttccacgg
atcgagaagataagagaagacaaagaatggtacgaatgtacatccctggaggacttagag
caacttcgagggaaagcctgtggaaagctcgcgtccagacacctttacatgggtggcgat
gatgaaccacaagagaaaaagaggaaagctgccccaaagatgaagaaagtcattggaatt
attgagcacctaaaagctcccaacctttctaacataaacagggtttctactgtgtttgaa
gatgtggagttttgtgtcatgagtggaaccagcagccatcccaagcctgacctggagaac
agaatcgccgaattgggtggttacatagtacagaacccaggcccagacacgtactgtgtg
atcgcagggtctgagaacattcgagtgaagaatatcatctcttcagataaacatgatgtc
gtcaagccagagtggctgctagagtgttttaggaccagaagctgtgtgccctggcaaccc
cgcttcatgatccacatgtgcccgtcgacaaagcagcacttcgcccaggaatacgaccaa
tacggggatagttactttgttgacacagatttgcaccaactgaaggaagtgttttcggga
attaaaaatgctggtgagcagactcctggggagatgagtcctgtgattgctgatttggaa
cacaggtattcctgggccagcgcgcctcttagcatgtttagacaccacaccgtttatttg
gacttgtacgctgtcatcaatgacttaagtaccagaatcaagggagctaggttagccatc
acagccttggagcttcgatttcatggagcgcaagtagtttcctgtttagctgagggagtg
tctcacgtgattgttggggaggatcagagtcgggttgcagacttgaaagctattcgaagg
actcttaagaggaaatttaaaatcttacaagaacgttgggtcactgtttcaatagacaag
tgtgaattacaggaggaaaatcggtatttggtttga
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