Bubalus bubalis (water buffalo): 102402505
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Entry
102402505 CDS
T05912
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102402505 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102402505 (DDX46)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102402505 (DDX46)
Spliceosome [BR:
bbub03041
]
Complex A
U2 snRNP components
U2 related factors
102402505 (DDX46)
Complex B
102402505 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
PMI_typeI_cat
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
102402505
NCBI-ProteinID:
XP_045017818
EnsemblRapid:
ENSBBUG00015015099
LinkDB
All DBs
Position
9:complement(64722113..64786104)
Genome browser
AA seq
1185 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRSRS
KEKTDSGESSKEKKKDKDDKEDEKEKDAGVCLLTQGTMVYVGAFVWSSGISVPWLLVPET
EDDGAQEGSEDRVGDAHQRVSFQRLGTLGLEVDDRGKAVVHDHHDGGHDEGVRQEDEETT
AQQGSDTHQAHAIGHYLHFSSTGQLQKRWHMAAKIVNLIRPTERPGHQAGAASGAHEHVV
AQGMADGHVAVVAHDGEQEGVGEAGREGEEHLAGTGHKGDGAVGGEQVGQHARDDGEGVE
DLGDREGTQEEVHGCVEAVLPPDGAHDEQVPQQREQVHQQEQQEEHQLKKSGPTVTKVVT
VVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKI
EYEPFRKNFYVEVPELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNS
LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGP
IAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM
IDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA
MEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFV
DKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVK
HLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVP
PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDD
EDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLG
IESQDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQN
ESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKI
YLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgggcagggagtcacgccactatcggaagcgatcagcatcacggggacgctctggaagt
cgatctagaagtcgttcaccctcagacaaaagaagtaaacgtggagatgatagacggtct
agaagcagggatagagacaggaggagagagaggtctcgtagcagggataaaagaagatct
cggtcgagagaccggaagcgtttgaggcgttccagaagtagagagagagatagaagtcga
gaacgaagacgatctcgaagtcgggacaggagacgttcaaggagtagaagccgaggccga
agatcccgatcttccagtcctggcaataaaagcaagaaagctgagaataggtctagatcc
aaagagaaaacagatagtggggaaagttctaaagagaagaaaaaagacaaagatgacaaa
gaggatgaaaaagaaaaggatgctggtgtatgtttactaactcagggtaccatggtgtac
gttggagcatttgtctggagctctggaatttctgtgccttggctccttgttcctgagact
gaagatgatggggctcaggaagggagtgaggaccgtgtaggtgatgcccatcagcgtgtc
tccttccagagactggggacccttgggcttgaggtagatgacagaggcaaagccgtagtg
cacgaccaccacgatggcggccacgatgaaggcgtaagacaagaggatgaggagaccaca
gcccagcagggcagcgatacacaccaggcccacgccattggccactacttgcacttcagt
tccacaggccaacttcagaagaggtggcacatggcagccaaaatagtgaatctcattaga
cccacagaaagaccaggccaccaggcaggcgcagcctcgggggctcatgagcacgttgta
gcgcaggggatggcagatggccacgtagcggtcgtagcccatgacggtgagcaggaagga
gtgggtgaagccgggcgtgaaggagaagaacatctggctggcacaggccacaaaggagat
ggagcggtcggtggagagcaggtcggccagcatgcgagggatgatggcgaaggtgtagag
gacctcggagatagagagggcacacaggaagaggtacatgggtgtgtggaggctgtgctc
cctccagatggtgcccatgatgagcaggttccccagcagcgtgaacaggtacatcagcag
gaacagcaggaagaacatcagctgaagaagtctgggcccacggtcaccaaagttgtcaca
gttgtcacaaccaagaaggcagtcgtagacgctgataagaagaagggtgagctaatggag
aatgaccaggatgccatggagtattcttcagaggaggaagaagttgatcttcagacagct
cttacaggttaccagacaaagcagagaaagcttctagaaccagtggatcatggaaaaatt
gaatatgaaccattcagaaaaaacttctatgttgaagttccagaattggcaaaaatgtct
ctagaggaggtaaatgtatttcggttggaaatggagggcattactgtcaaggggaaaggt
tgccccaaaccaattaaatcttgggttcagtgtggaatttctatgaagatcttaaattct
ctaaaaaagcatggttatgaaaagcccacgccaatccaaacccaggcgattcctgcgata
atgtctggacgagatttgattggtattgccaagacaggaagtggaaagaccattgccttt
ctgttgcccatgtttagacacatcatggatcagaggtctttagaagaaggagaggggcca
atagctgtcatcatgactccaactcgagaactggctttacagattactaaagaatgtaag
aagttttcgaagaccttgggccttagagtggtctgtgtttatggaggaacaggaatcagt
gagcagattgctgagctgaaaagaggtgctgaaattattgtttgtacacctggtcgaatg
attgacatgttagcagctaatagtggtcgggttacaaatcttcgaagagtgacgtatgtt
gttttagatgaagcagacagaatgtttgacatgggttttgaaccacaggtcatgcgcatt
gtggataatgttcgccctgacagacagacagttatgttttcagctactttccccagagct
atggaagccttggctcggagaatcctgagtaaacccattgaagtgcaggttggaggcaga
agtgtagtttgctcagatgtggagcaacaagtgattgtgattgaagaagaaaagaaattc
ttgaagctacttgaacttctaggtcattatcaagaatcaggatctgtcattatatttgtg
gataagcaggaacatgctgatggtcttctgaaagatttaatgagagcttcttacccttgc
atgtctcttcatggaggcattgatcaatatgacagagatagcatcataaatgattttaag
aatgggacctgcaaacttctcgtggccacatctgttgctgcccgaggcctcgatgtgaag
catctgattcttgttgtaaactatagctgccccaaccattatgaggattatgtgcacaga
gcaggacggactggaagagcaggcaacaaaggctatgcatacacttttatcacagaagat
caagctcggtatgctggagacataattaaagcccttgaactgtcagggactgcagtgcca
cctgatctagagaaactctggagcgatttcaaagatcaacagaaagctgaagggaaaata
attaaaaagagtagtgggttctctggtaagggattcaagttcgatgaaacagaacaagct
ttggctaatgagagaaagaagttacaaaaagctgctcttggtctgcaagattcagatgat
gaggatgctgcggttgatattgatgagcaaattgaaagcatgtttaattcaaagaagcga
gtgaaggatatggcggctcctggaacatctagtgttcctgctcccactgcaggaaatgct
gaaaaactggaaattgccaagagattggctcttagaatcaatgctcagaagaatttgggc
attgagtctcaggatgtaatgcaacaggccaccaatgccattctcagaggtggcaccatc
ctggctcccactgtatctgcaaaaaccattgcagagcaacttgctgaaaagataaatgcc
aagctcaactatgtgcctttggagaaacaagaagaggagagacaggatggtggacagaat
gaatcttttaagagatatgaggaagaattagagatcaatgacttcccacagactgctagg
tggaaagttacctctaaggaagctctgcagagaatcagtgaatattctgaagctgcaatt
acaatcagaggaacatacttcccacctggcaaagagcccaaggaaggagagcggaaaatt
tacttggcaattgaaagtgccaatgaactggctgtgcagaaagcaaaggcagaaatcacc
aggcttataaaagaagaactgatccgattgcaaaattcataccaaccaacaaataaagga
agatacaaagtcttataa
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integrated database retrieval system
