Bubalus bubalis (water buffalo): 102406691
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Entry
102406691 CDS
T05912
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102406691 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102406691 (PCF11)
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102406691 (PCF11)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102406691 (PCF11)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102406691 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
102406691
NCBI-ProteinID:
XP_006055699
EnsemblRapid:
ENSBBUG00015024775
LinkDB
All DBs
Position
5:complement(93004706..93029073)
Genome browser
AA seq
1554 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIPDMKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQEAENTRVSDMSKRDPRLKKHLQDKTDSKDDDI
KDKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTMTEESEKLGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPSRE
ERSAKRSTKQDVRDPRRIKKTEEERPQEAAGQHSTKSSTEPKENVENWPTSKSTKRWKSG
WEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKPQHRLSVDANLQIPKELTVASK
RELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDS
DKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPAKMIFEGPNKLSPRID
GPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQA
GGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGG
LRFENPRGQPVGGLRFEGGHGPSGAAMRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPHG
QSVAGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIE
GPLGQGGPRFEGCHPLRFEGQPGQSSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQ
VQPRFDGVPQRFEGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNA
FNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGN
FGNLPAPITVGNIQASQQVLTGVSQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPD
NHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQNEDQDVPDLTNF
TIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTH
RRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVE
SCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVEN
PLNIMLNIVKNELQEPCESPKVKEERTDTPPACTEESIATATEIKTENDTVESV
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatatttcctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaagtttttaaataaatcgcctgaagagtcttcaacacctggcacagtggtc
agttcccctagcatctccactcctcctattgtcccggatatacagaagaatcttactcaa
gagcaactaatcaggcagcaattactggcaaaacaaaagcagctgttagaacttcagcag
aaaaagctggagcttgaacttgagcaagctaaggcacaactggcagtttcccttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacag
attccccctatggcagttaaagctccccatcaggttcctgtgcagcctgagaaaagtcgt
ccaggtccatccttacaaattccagatatgaaaggaactaaccgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaagtcacaggaaagaattcctaatg
aacacactgaaccaatctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttggattctaaatccaaatctaaatctaaatcaccgtcacctttgaaaaataaattatcc
cacacaaaagacttgaaaaatcaagaagctgaaaatacaagggtgtctgatatgagcaag
agagatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgatata
aaggacaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggtgggaagtagaaataaaatcataaatggcattgtacaaaaacaggataca
atgacggaagaatcggaaaaactggggacaaaaccagggagatcgagtactagaaagcga
tcaagatcacgatcacccaagtctcggtcaccgattatacattctcccaagagaagagac
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcaacccccaaagctggg
aagattcgccagtcaggagttaaacagtcacacatggaagagtttacaccttccagggaa
gaaagaagtgcaaagagaagtactaaacaggatgttcgagatccaaggcggataaaaaag
actgaagaggaacgaccacaagaggctgcaggtcaacattctaccaagtcaagcactgaa
ccaaaggagaatgtagaaaattggccaacttccaagtctaccaaaagatggaaatccggt
tgggaagaaaataaaagtttacaacagggtgatgaacatagtaaagctcctcatctaagg
catagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagccgcag
catcgattaagtgtagatgccaatcttcagattcctaaagagttaactgttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttgttgttgtgcatcaaatacgacagctatttcagtatcaagaaggtgtacgagaa
gagcagagatcaccattcaatgatcgttttccacttaaacggcctagatatgaagattca
gataaaccatttgtagatagccctgcatcaagattcgccggccttgatacaaatcagcga
cttacggctttagcagaagatagaccattatacgatggacctagcaggccatcagtagcg
agagatggcccagccaagatgatttttgaaggacctaataaattaagccctagaattgat
ggacctcctacaccgggttctcttcggtttgatgggtcaccaggacagatggggggaggt
ggccctttgagatttgaaggaccacaaggccagttaggaggtgggtgtcctttgagattt
gaaggtcctccaggaccagtcgggacacctctgcgatttgaggggccgattggtcaagca
ggaggaggtggcttccgatttgaaggttcccctggtctaaggtttgagggatctgcaggt
ggtttgcgatttgaaggaccagggggccagcctgtgggcggtctcaggtttgaaggacat
cggggtcaacctgtgggtggtctgaggtttgagggacctcatggtcagcctgtgggtgga
cttcgatttgagaatcctcgaggtcagccagtaggtggacttagatttgagggaggtcat
ggtccatcaggggctgcaatgaggtttgatggacctcatggtcagccatcaggtgggatc
agatttgagggcccattgttacagcagggagttgggatgaggtttgagggcccccatggt
cagtcagtagctggtatgaggtttgaaggacaacataatcagcttggtgggaaccttagg
tttgagggtccacatggtcagccaggggttgggatcaggtttgaaggacctttagtccaa
caaggaggtggaatgaggtttgagggtccttcggtcccaggaggtggcctgagaatcgaa
ggacctctgggtcaaggtggtccgaggtttgaaggttgtcatcctttaaggtttgaaggg
cagccaggtcagtcatcactcctgcctagatttgatggattacacggtcagccaggtcct
agatttgaaagaactggtcagccaggcccacagaggtttgatggacctcctggacagcag
gttcaaccaagattcgatggtgtgcctcagagatttgaaggaccacaacaccagcaagca
tcaaggtttgatattcctcttggtcttcaaggcacacgatttgacaatcatccttcacag
aggcttgaatcagtatctttcaatcagactggcccatataatgatccacctggcaatgct
tttaatgccccatcccaaggactacagttccaaagacatgaacaaatgtttgactcacct
caaggaccaaatttcaatggaccacatggccctggaaaccagagtttttccaatcccctt
aacagagcttctggacactattttgatgagaagaatcttcagagttctcaatttggaaac
tttggcaatttacctgctccaataacagtaggaaatattcaggcatctcaacaggttctg
actggtgtttctcagccagtagcatttggccaaggacagcaatttttgccagttcatcca
caaaatcctggagcatttgttcagaatccttcaggagccctgcctaaggcttatcctgat
aatcatctcagtcaggtggatgtaaatgaattattttcaaaactgctaaaaacaggaatt
ctcaaattgtcccagcctgattcagctacaacacaagtaaatgaagttgctgctcagccc
cctgctgaggaggaggaagatcaaaatgaagatcaagatgttccagatcttaccaatttt
acaattgaagaattaaaacaacgttatgatagtgttataaatcgactgtacactggtatt
cagtgttattcctgtggaatgaggtttacaacatcacagacagatgtatacgcagatcac
ttggactggcattatcgacaaaatagaactgaaaaagatgtaagcagaaaagtcactcac
agacgttggtactacagtttaacagactggatagaatttgaggaaatagctgatctggaa
gaacgtgcaaagagccagttttttgaaaaggtacacgaagaagttgtactcaaaactcag
gaggctgctaaagaaaaggagttccaaagtgtaccggctggaccagcaggagcagtcgag
agttgtgaaatctgtcaagagcaatttgaacagtactgggatgaagaggaggaggaatgg
catttaaaaaatgctattagagtagatggaaagatttatcatccatcatgttatgaagat
tatcaaaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaaaat
cccttgaatattatgttgaacattgtcaaaaacgaattgcaggaaccctgtgaaagtccc
aaagttaaggaagaacgaactgatactccaccagcttgcacagaggaaagcatagcaaca
gccactgaaattaaaacagaaaatgatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
