Bufo bufo (common toad): 120977371
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Entry
120977371 CDS
T07950
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03013
Nucleocytoplasmic transport
bbuf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120977371 (UPF3B)
03015 mRNA surveillance pathway
120977371 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120977371 (UPF3B)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120977371 (UPF3B)
mRNA cycle factors
P-body specific factors
120977371 (UPF3B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
120977371
NCBI-ProteinID:
XP_040261231
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All DBs
Position
8:132026578..132040686
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AA seq
457 aa
AA seq
DB search
MKEDKENTKPKEKKGEQLGAEDGDRPVKEKKEVMSKVVIRRLPPSLTKEQLEEHLQPLPE
HDYFEFFANDTSLFPHMFSRAYINFKSPDDIVLFRDRFDGYVFIDHKGQEYTAVVEFAPF
QKVAKKKSKKKDSKTGTIDDDPEYKKFLDSYSMDEEKLASTPETLLEEIEARNKEMIAKK
TTPLLSFLKNRQRIRDEKREERRRRELERKRIREEERRKWKEDERRKRKEAEKQKKYERT
PEKETERIKDEPKIKLLRKPEKDDEREPEKKFKPRKLEKENVREERISTTKRSDGETGEE
KLKRCEDDYMKDYRDKDYRDKDYDLERRAREKERQRYHEDERRKQRDRYEKDRYFRRRDD
DFRKDREVVKERVRKQEVSESQSTTDKVERPSREEKKEDMAKRDRIRNKDRPAMQLYQPG
ARSRSRLTPCDESPAKSGDQTTEKTQESETSDTRKEE
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggagaacacgaaacccaaggagaagaagggggagcagctcggggcg
gaggatggggacagacccgtgaaggagaagaaggaagtcatgagcaaggttgtgatccgt
cgcttgcctccaagtcttaccaaagaacagctggaagagcatcttcagcctctaccagaa
cacgactattttgagttttttgcaaatgacaccagcttatttcctcatatgttctcaagg
gcatacatcaacttcaaaagtccagatgacattgtgttattcagagatcgctttgatggc
tatgtgttcattgaccataaaggtcaggaatatacagcggttgtggaatttgcccctttt
caaaaagtggcaaaaaagaaaagcaagaaaaaggattccaagactgggactattgatgat
gatccagaatacaaaaagttcttagattcatacagcatggatgaagagaagctcgcctcc
actccagagacattgttggaagaaatagaggcaagaaacaaagaaatgatagctaagaag
acaactccattgttgagcttcctaaaaaatagacagagaataagagatgaaaagcgtgaa
gagagaaggaggagagaacttgagcgtaaaagaatacgagaagaagaaagaaggaagtgg
aaagaggatgagagaagaaaaaggaaagaagcagaaaaacagaaaaaatatgaaaggact
ccagagaaagaaacagaaagaataaaagatgagcctaaaatcaagcttcttagaaagcct
gagaaagatgatgaacgagagccagaaaagaagtttaaacccagaaagctggaaaaagag
aatgtgagagaagagcgcatctcaaccaccaagagatccgatggagaaactggagaagaa
aagcttaaacgatgtgaagatgactatatgaaagattatagagataaggattacagagat
aaggattatgatttagagcgacgtgcaagagaaaaagagaggcagcgttatcatgaggat
gaacggcgtaaacagagggatcgatatgagaaagaccgatactttcgaagacgggatgat
gacttcaggaaggaccgggaagtagtaaaggagagagtgagaaagcaggaggttagtgaa
tctcagtctaccactgataaagttgagcgtccatcccgagaagaaaagaaagaagatatg
gccaaaagagatcgaatcagaaacaaggatcgccctgcaatgcaattataccaacccggg
gcaaggagcaggagcaggttaacaccgtgtgatgagagcccagccaaatccggtgatcag
acaactgagaagacgcaggagagtgagaccagtgataccagaaaagaagagtaa
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