Bufo bufo (common toad): 120995245
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Entry
120995245 CDS
T07950
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03030
DNA replication
bbuf03410
Base excision repair
bbuf03420
Nucleotide excision repair
bbuf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120995245 (LIG1)
03410 Base excision repair
120995245 (LIG1)
03420 Nucleotide excision repair
120995245 (LIG1)
03430 Mismatch repair
120995245 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbuf03032
]
120995245 (LIG1)
03400 DNA repair and recombination proteins [BR:
bbuf03400
]
120995245 (LIG1)
Enzymes [BR:
bbuf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120995245 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
120995245 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120995245 (LIG1)
DNA replication proteins [BR:
bbuf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120995245 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120995245 (LIG1)
DNA repair and recombination proteins [BR:
bbuf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120995245 (LIG1)
NER (nucleotide excision repair)
Other NER factors
120995245 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
120995245 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120995245
NCBI-ProteinID:
XP_040280263
LinkDB
All DBs
Position
1:complement(55095164..55200592)
Genome browser
AA seq
908 aa
AA seq
DB search
MQRSIKSFFQPKAEAVAKKEKKSEEVEIESKEGKKSCDKDKSTEQPLKEKNGKLSTNGAK
SPIKRVSKKLTRVLTSDSEDDESMEVEVSATEKDSKTTDNAKVVTSGAVISSSSSHSPDA
SCRTGSADVPPSSIPKRKTARKQMPKRKLESVQETPSLQKKENDVEEKPAKRQLQETALS
AVMKTEEKEEDEKVDDKSSEQIKEKVASPKPVKVEQNIENSEKMTADKSPAPTKGPKSLG
SFFGTGKQEVSQKETDYNPSKSRYHPVKDACWNAGQMVPYLAVARSFEMIENESARLKNI
ETLSNFLRSVICLSPGELLPCIYLCLNRLGPAYEGLELGIGETILMKAVAQATGRQLDKI
KAEAQEKGDLGLVAESSRGNQRTMFTPPKLTVPGVFNKLKEIARMSGNAATNKKIEIIKG
LFVACKHSEARYIARALGGKLRIGLAELSVLSAIAQAVTLTPPDQSSPDAVLDASKGMST
DAKKAWIEENALILKQTYCELPNYDLVIPAVLKHGIKELPQHCKLTPGVPLKPMLAHPTK
GVGEVLKRFDEAAFTCEYKYDGERAQIHILENGEVHVYSRNQENNTTKYPDIIARIPQVK
KDTVKSCIFDSEAVAWDPQKKQIQPFQVLTTRKRKDVEASDIKVQVCVYAFDMLYLNGES
LVREPFSKRRQLLRESFTELEGQFMFATYMDTSNTDEISEFLDQSIKDSCEGLMVKTLDQ
NATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGGYFGKGKRAGIYGGFLLASYDEESEE
YQTICKIGTGFTDEDLENHHSLLKDHVIDSPRSYYRWDSATEPDHWFEPVQVWEVKCADL
SISPVHKAAIGLVEDQRGISLRFPRFVRVRDDKKPEEATNSSQVAELYKKQQQIQNVSAT
EKDDDDFY
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcagtataaagtcgttttttcaacccaaagcagaagctgttgccaagaaggaa
aagaaatcggaggaggttgagatagagtctaaagaaggaaagaaatcctgcgacaaagat
aaaagcaccgagcagccattaaaagaaaaaaatggtaagttatctacgaatggtgcaaag
tctccgataaaacgtgtgtcaaagaaattgacgcgggttctgacaagtgacagtgaagat
gacgaatcgatggaagttgaagtgtccgctacagaaaaagatagtaaaaccactgacaat
gcaaaggtggtcacaagtggagcagttattagttctagtagcagccattccccagatgcc
tcctgtcgtactggttcagcagatgtgcctccctccagcatccctaaacgtaaaacagct
cgtaagcagatgccaaaaaggaaactcgaaagtgtgcaggaaacacctagtctgcagaaa
aaagagaatgatgtcgaagaaaaacctgcaaagcgtcaactgcaagaaacggctttaagt
gcagtcatgaagacagaggaaaaggaagaggatgaaaaagttgacgataaatcttctgag
cagataaaagaaaaagttgcaagccctaagcctgttaaggtggaacaaaatatagaaaat
tcagaaaaaatgactgcggacaagtctcctgctccaaccaagggacccaaaagtctcggc
agtttctttggtaccgggaagcaagaggtttcacagaaggagacagattacaatccgtcc
aaaagtcgttaccatcccgtgaaggatgcctgctggaacgccggccagatggttccatac
ttagctgttgcacgttcttttgagatgatagaaaatgagtctgctcgcttaaagaacata
gaaacgctgagtaatttcctgcgatctgtcatctgtttgtctccgggggagcttctgcca
tgtatctatctctgtctgaaccgcctgggtcctgcctatgaaggtcttgagcttggcatt
ggagaaaccatattaatgaaagctgttgcacaagccacaggtcgacaattagacaaaatt
aaggctgaagctcaggagaagggtgacctaggacttgttgcagagagcagccgtggtaat
cagcgcaccatgttcacacctcccaagctcacagtccccggtgtttttaacaagctgaaa
gagatagccaggatgtctggtaatgctgctacgaataagaagattgagatcattaagggc
ttgtttgttgcgtgcaagcattctgaagcgcgatacatagctagagctctaggaggaaaa
cttcgaataggactggcagagctgtccgttctctcagcgattgcccaagctgttacctta
acaccaccggatcaatcatcaccagatgcggtattagatgcttcaaagggtatgagtaca
gatgccaaaaaagcttggattgaagagaatgccttgatcttgaagcagacatactgtgaa
ttaccaaactatgatttggttattcccgccgtcctgaagcatggaatcaaagaacttcct
caacactgtaaactcactccaggggtccccttaaagccgatgttggcacaccccaccaag
ggtgttggcgaagtattgaaaaggtttgatgaagctgcttttacctgtgaatataagtac
gatggagagcgcgcccagatacatatactggagaatggagaagttcatgtctacagcagg
aaccaagaaaataatactacaaaatatcctgatataattgccaggatcccgcaggtgaag
aaggatacagtgaagtcctgtatatttgactcggaagctgttgcatgggaccctcagaaa
aagcaaatccagccgttccaagttctaactacacggaaaagaaaggatgttgaagcttct
gacataaaagtccaggtctgtgtgtacgctttcgacatgctttaccttaatggagagtct
ttggtcagagagccattttctaaacggaggcaactccttagagaatcctttaccgagctg
gaaggacagttcatgttcgccacatacatggatacttcaaacacagatgaaatttcagaa
tttcttgatcaatctataaaagattcttgtgaaggtttgatggtaaaaacgttggaccag
aatgcaacatatgaaattgcaaaacgttcccataattggttaaagttgaaaaaagactat
ttggaaggtgtaggagacaccttggatctggtggtgattggtggttactttggaaaggga
aagcgagcgggcatatatggaggatttttacttgcatcatacgatgaagaaagtgaagaa
tatcagaccatatgcaagattggaacaggctttacagatgaagacttagaaaatcatcac
agtttgctaaaggatcacgttattgacagtccgagaagttactatcgctgggacagtgct
acagagccagaccattggtttgaacctgttcaagtctgggaagtaaaatgtgcagatctt
tcaatttcccctgtccataaggcggctataggactggtggaagatcaaaggggaatctcc
ctgcgtttccctcgttttgttcgtgttagagatgataaaaaacccgaagaggcaacaaac
agttctcaggtcgcagaactgtacaaaaagcagcagcaaatacaaaatgttagtgcgaca
gagaaagacgacgacgacttctattag
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