Bufo bufo (common toad): 120995800
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Entry
120995800 CDS
T07950
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120995800 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbuf03400
]
120995800 (LIG4)
Enzymes [BR:
bbuf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120995800 (LIG4)
DNA repair and recombination proteins [BR:
bbuf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120995800 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
120995800
NCBI-ProteinID:
XP_040281165
LinkDB
All DBs
Position
3:469994176..470004372
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AA seq
906 aa
AA seq
DB search
MSSNQLPLTVASQVPFADLCNTLERIQKCKNRTEKTKILKQFIDSWRKFHDALHKSEPTT
TDSFYPAMRLIIPQLERERMAYGIKETLLAKLYIKVLGLSKDGKDALKLLNYRTPTGSNS
DAGDFAAIAYFVLKSRCRKEGTLFIKDVNDQLDSIASNNAGKKKELIEKSLLHLIANSTA
LEQKWLIRMIIKDMKLGFSQQTVFSIFHPDAAELHNVTTDLEKVCLQLHDPNVCLSDVSI
SMFSAFKPMLAAIADIQHIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTR
QFGGSPLEGSLTPYIHNVFRMDVQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVDDSDL
QTCFCVFDILMFNGQKLAHETLRKRYDILCDIFTPVPGRIHIVGKTEASTKKNVVDALNE
AIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGLRGGMM
SHFLCAVAEKPFPGEKPSVFHSLCRVGSGYTMKELYDLGLKLAPHWKPYRKRDPPTNLLC
GTEKPEVFLEPCNSVIIQVKAAEIVHSDMYKTNCTLRFPRIEKIREDKEWYDCMTLDDLE
QFREKASGKLASKHLDVSEEPREKKRKTVPKIRKVIGVVSHLKAPDLTNISKQSNMFEEV
EFCVMSGTDEHSKASLESMIAACGGLVVQNPGEDTYCVIVGTTNVRVKNIISSNKHDVVR
AAWLLECFEKKTFVPWQPKHMIHMCLSTKEHFACEYDCHGDSYVTDTNESELKDLFTGMP
DPKDKIPLDMIADLEQRYSWENSFTSLFRQCIVYLDTYATINDPLAKIENSALSITALEL
RYNGAKVVSHLEEGVSHVVVGDDLSRLPEIKSLRRTLTRKFKIVRVLWVADSLKTGMLQM
EQDYLL
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatcaactgcccttaaccgtcgcttctcaagtacctttcgcagatctctgt
aatactttagaaagaattcaaaaatgcaagaacagaacagagaaaacaaagattttaaag
cagtttattgactcttggagaaaattccatgatgcccttcacaagagcgaacctaccact
acagactctttttatccagctatgagacttattataccacagttagaaagagagcggatg
gcctatggaattaaggagactttgctggccaaactgtatatcaaagtgcttgggttgtct
aaagatggcaaagacgctcttaaacttttaaattatagaactcctaccggctccaattca
gatgcaggcgactttgctgcaattgcttacttcgtgcttaagtcacgttgccgaaaggaa
ggaaccttgttcataaaagatgtcaatgatcaattagattcaatagcaagcaacaatgca
ggcaagaagaaggaacttatagagaaaagtctgctgcatttgattgcaaactccactgcc
ctggaacagaagtggcttattaggatgattattaaggacatgaagcttgggttcagccag
caaacagtcttttccatctttcacccagatgctgcagaactgcacaatgtcaccaccgat
ttagaaaaagtgtgtctacagctacatgacccgaatgtgtgccttagcgatgtctctatt
tcaatgttttctgcctttaaaccaatgcttgctgccattgcggacatacagcacatagaa
aaacaaatgaaccaccagagtttttatattgagacaaagcttgatggtgagaggatgcag
atgcacaaggatggagatgtctataaatacttttctcggaatgggtttgattacactcgg
cagtttggtggttctccccttgaaggctccttgacaccatatattcataatgtctttcgt
atggatgtgcaaaactgcatacttgacggtgagatgatggcctacaatcctaacactcag
actttcatgcagaaaggtaacaagtttgacatcaaaaggatggtggatgattcagacctt
cagacttgtttctgcgtgtttgacatcttgatgtttaatggccaaaagttggcccatgaa
acacttagaaaaaggtatgatatcctttgtgatatctttaccccagttccaggaaggatt
cacatagttggcaaaactgaggccagtaccaaaaagaatgttgttgacgcgctgaatgag
gcaattgataaccgcgaggaaggaattatggtaaaagaccctatgtccatttataagcca
gataagcgtggagaaggttggttaaagatcaaacctgagtatgttaatggactcatggat
gaattagatctcttgattattggtggatattggggcaagggtctacgtggtggtatgatg
tctcattttttgtgtgcagttgctgaaaaaccatttccgggagagaagccgtctgttttt
cattcactttgtcgagttggctctggctatacaatgaaagaattatacgacctaggttta
aagttggctccacactggaagccttatcgaaaaagagatccacctacaaatcttttgtgt
gggactgaaaaaccagaagtatttcttgagccttgtaattctgttattattcaagtgaag
gcagcagagattgttcacagtgatatgtacaaaacaaattgtactctccggtttccccga
attgagaagatcagagaggacaaggaatggtatgactgcatgacacttgatgacttggaa
caatttagagaaaaggcttctgggaaattggcatcaaaacacttggatgttagtgaagag
ccacgagaaaagaaacgaaaaactgtccctaagattaggaaagtaatcggtgtggtttct
catttgaaagcacccgatcttaccaacatctcaaagcagtcaaatatgtttgaagaagtt
gagttctgtgtgatgagcgggacagatgagcattcaaaagccagtctagagagcatgata
gctgcttgtggtggcttagtggtgcagaatcctggagaagacacttattgtgttattgta
ggaactacaaatgtcagagtgaaaaatattatctcgtctaataagcacgatgtcgttaga
gccgcttggcttcttgagtgctttgaaaagaaaacctttgtaccttggcaacctaaacat
atgattcatatgtgtctgtccaccaaggaacattttgcttgtgaatatgactgccatggt
gacagttatgtgacagatactaatgagtctgagttgaaggacctgtttaccggaatgcct
gaccccaaggacaaaatcccactggacatgattgctgaccttgagcaacgctattcatgg
gaaaattcttttaccagtctgttccgtcaatgtattgtatatctagatacatatgcaact
attaatgacccactcgctaaaattgaaaattctgctttgagtataacagcattggagcta
cgctataatggagcaaaagtagtcagccatcttgaagaaggcgtgtcacatgttgtggta
ggggatgacttgtctcgtttgccagaaattaaaagtctgagaaggacactgaccagaaaa
tttaagattgttcgagtcctgtgggtagctgattctctgaagacgggaatgcttcagatg
gagcaggattatttattgtaa
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