Bufo bufo (common toad): 121009292
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Entry
121009292 CDS
T07950
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121009292 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbuf03041
]
121009292 (DDX46)
Enzymes [BR:
bbuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121009292 (DDX46)
Spliceosome [BR:
bbuf03041
]
Complex A
U2 snRNP components
U2 related factors
121009292 (DDX46)
Complex B
121009292 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdAMP_rec
PMI_typeI_cat
Motif
Other DBs
NCBI-GeneID:
121009292
NCBI-ProteinID:
XP_040298242
LinkDB
All DBs
Position
1:complement(333777241..333860497)
Genome browser
AA seq
1045 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSHSPPDKRTKREDRRSRSRDRDRRRERSRSRDRRRSR
SRDRKRPLRRPSRERERSRERRRSRSRERRRSTSKNRGRRSRSGSPSKTKKGEKRSKSQE
KTDLSEVIKEKKKDEKEEDKEKDVSNFDQNKLEEEMRKRKERVEKWREEQRKRLVESIGE
LRREAEEMRQGKKWSLEDDDDDEDEPTEGEKEVLEEEDEELDPLDAYMEEVKEEVKKFNM
GSVKGGSEKKTGPTVTKVVTVVNTKKDDMESNKKKGELMENDQDAMEYSSEEEEVDLQTA
LTGFQTKQRKLLEPVDHGKIEYEPYRKNFYVEVPELAKMTPEEVSAFRLELEGIIVKGKN
CPKPIKSWVQCGISMKIMNSLKKHAYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAF
LLPMFRHIMDQRPLEEAEGPISVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS
EQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRATYVVLDEADRMFDMGFEPQVMRI
IDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEDKKF
LKLLELLGHYQETGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFK
NGVCKLLVATSVAARGLDVKHLILVINYNCPNHYEDYVHRAGRTGRAGNKGYAFTFITED
QARHAGDIIKALELSGTAVPAELEQLWSEFKEQQKAEGKVIKKTSGFSGKGFKFDETEHA
LANERKKLQKAALGLQDSDDEDTALDIDEQIESMFNSKKRVKDMTGPGVPGGAGGSVGAA
GGTGGSSSVSSTSVPTAGNAEKLEIAKRLAKKLSVNKNLGAEAQDVMQQATNAILRGGTI
LAPTVSAKTIAEQLAEKINAKLNYVPVEKLEEDKQEAGPNESFKRYEEELEINDFPQTAR
WKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESASELAVQKAKAEIT
RLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgggcagggagtccagacattacagaaagcggtcgtcatcacgcggtcgctccggaagc
aggtccaaaagtcactcaccgcctgacaagaggactaaaagagaagaccgtcgatcaagg
agccgggaccgcgatagaaggagagagaggtcacgtagcagggatcgcagaagatcgcgc
tccagagacaggaagcgtccattacgtcgtccaagcagagaaagagagcggagccgggag
aggagaagatcacgcagcagggagcgaaggcgatccaccagcaaaaaccgcggtagacga
tcacgttctggcagccctagcaaaactaaaaagggagaaaaaaggtcaaaatcacaagaa
aaaacagacctttcagaggtaatcaaggaaaagaaaaaggatgagaaggaagaggataag
gaaaaggatgtcagtaattttgatcagaataagctggaagaggaaatgaggaaacgtaaa
gagagagtagaaaaatggcgagaagagcagcgtaagaggcttgtggaaagtattggagaa
ctgagaagagaagcagaagaaatgcgacaagggaagaaatggagtttagaagatgatgat
gatgacgaagatgaaccaactgagggagagaaggaagtcctggaagaggaggatgaggag
ttggatcctctggatgcctacatggaagaggtcaaagaagaagtaaagaagtttaacatg
ggcagtgtgaaaggtggaagtgaaaagaaaactggaccaacagtaacaaaggtagttact
gtggtgaatactaaaaaggatgacatggagtccaataaaaagaaaggagaacttatggag
aatgatcaagatgctatggagtattcttcagaagaagaggaggttgatcttcagactgcc
ttgaccggatttcagacaaagcagcgcaaactcctggagccagtggatcatggaaagata
gaatatgagccctacaggaaaaacttttatgtggaagttccagagttagccaagatgaca
ccagaagaggtcagtgccttcagacttgaacttgaaggaattatagttaagggtaaaaat
tgtcctaaaccaattaaatcctgggtgcagtgtggcatatctatgaagatcatgaattcg
ctgaaaaaacatgcatatgagaaaccaacaccaatccaggcgcaagcaattcctgcagtc
atgtctggtcgtgatttaattggcattgctaaaactggaagtggaaaaacaattgccttt
cttctgcctatgtttcgccatattatggaccagagaccccttgaagaagcggaaggacca
atttcggtcataatgacacctactagagagctggctttacaaataacaaaagagtgcaag
aagttctccaagactcttggactgagagtagtctgtgtatacggaggaaccggcatcagt
gaacagattgctgaactcaagcgaggtgcggagattatagtctgtaccccaggtcgcatg
attgacatgttagctgcaaacaatggtcgagtaacgaacctgcggcgggctacatatgtt
gtgctggatgaggcagacagaatgtttgacatgggctttgaaccacaggtcatgagaatc
atagacaatgtcagaccagacagacagacggtcatgttctctgctacattcccaagagcc
atggaagctttagcaagaagaatattaagcaagcctattgaagtccaagttggaggaaga
agtgttgtatgttctgatgttgaacaacatgtgattgtgattgaggaggacaagaaattt
cttaaattgcttgagcttttggggcattatcaagaaacgggatcagtaattatatttgtt
gacaagcaagagcatgcagatggcttgctgaaggacttaatgagggcgtcctatccatgc
ctctcacttcatggaggtattgatcagtatgacagagatagcatcatcaatgactttaaa
aatggtgtgtgcaaattgctagtggccacctctgtggcagctcgaggactggatgtcaag
catctgatcttggtgatcaattataattgtccaaatcactatgaagattatgtgcacaga
gctggccgtacaggcagagctgggaataaggggtacgcctttacattcatcacagaggat
caggctcgccatgcaggggatataataaaggctttagagctttcagggactgcagttcct
gcggagttggagcagttgtggtctgagttcaaggagcaacagaaagctgaaggtaaagtg
ataaagaaaacaagtggattttctgggaaagggtttaagtttgatgaaacagagcacgct
ttggcaaatgaaaggaagaagctgcagaaggcagcacttggcctccaagattcagacgat
gaggacactgctctggatattgatgagcaaattgagagcatgttcaactctaagaagaga
gtgaaagacatgactggacctggggtacctggtggagctggtggcagtgttggagcagca
gggggtacaggaggatccagttctgtgtctagtacatcagtacccacagcgggaaatgct
gagaaattggaaattgccaaacgattggccaaaaagctcagtgtaaacaagaacctcggt
gcagaagcccaggatgtaatgcagcaggccactaatgcgatcctcaggggaggcacaata
ttggcaccaaccgtgtctgcaaaaactattgctgaacaattggcagaaaagatcaatgcc
aagctcaattatgtcccggttgagaaactggaagaggacaaacaggaagctggtcctaat
gagtccttcaagagatatgaggaggagctggagattaatgacttccctcagactgcaagg
tggaaagtaacgtccaaagaagcactgcagaggatcagtgaatattcagaagcagccatc
accattaggggcacttatttcccacctggcaaagaacccaaagaaggggaaagaaagatt
tatttggcaattgaaagtgctagtgaattggcagtacagaaggcaaaggcagaaattacc
cgacttatcaaggaagaactcatcagactgcaaaactcctaccagccgaccaacaaagga
agatacaaagtgctttga
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