Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1137
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Entry
HMPREF9228_1137 CDS
T01844
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9228_1137 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1137 (mfd)
Enzymes [BR:
bbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9228_1137 (mfd)
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF9228_1137 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
CBS
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AEF26438
LinkDB
All DBs
Position
complement(1296961..1300575)
Genome browser
AA seq
1204 aa
AA seq
DB search
MAAKAKTSDTQSSRGQAADSRTVHPDLINGSLVGVLSKLEQDKVFHQLAVGDIEVSDDVD
NSILAGVPEGLRPALAAAIAQGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIA
QLEAWETLPHERLSPRADTVASRMAVFRRLKHPDTGNAMFGPIRILVMPIRSLIQPVVQG
LGDVEPLVFTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVR
IEFFGDEIDTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKALIGSIPNAEDM
LESIANAIPVEGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFL
AASWHVAASGHGAGAPISFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLAGHVQLD
AQNPAEFRGDEAKASQGIDGLLDAGFHVTITAAAAGTLARLKRALNTTGITTFDTIRSQA
IDGFVDNAAKIALLTERDLTGRSSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRF
IEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKL
GGSDWAATKAKARKHVHEIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQ
LTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
QETFTDRFEGFPVNVAAMSRFQTTKEINATIEGLENGTVDVVIGTHKLLNPKIKFKDLGL
VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP
VLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDISSIADKIHTLVPESRVGIAHGKM
GEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGR
GRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSG
HIEGVGFDLYVRMVSEAVEKYKEPDEDVEPVSVSIDLPIEASIPIDYIDSDKLRLEAYRK
LASARNEADLKDLKEELTDRYGKPPVEFETLFDVARLKFKARKLGISEILAQSNRVRIGR
IDPPESIQMRMTRIYKGTQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAW
RPQR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggccgctaaggcgaaaacttccgacacgcagtcttcccgtggacaagcggcagacagc
cggaccgtgcatccggatctgatcaacggctcgctcgtgggcgtcctgtccaagctcgag
caggacaaggtttttcatcaactggcggttggcgacatcgaagtgtcggatgatgtcgac
aattccattttggccggtgttcccgaaggattgcgtccggcattggccgccgcaatcgcc
caaggcgtgaacggtggggcaggcaagccggtcgtgctggttgtggcttccggccgtgaa
gccgaggaaaccgtgggatcgctgcgctcctggtatgacggcgacccgaacgatatcgcc
cagcttgaggcgtgggaaaccctgccgcacgaacgattgagcccgcgcgcggacaccgtg
gccagccgtatggccgtgttccgcagactgaagcacccggacacaggcaatgcgatgttc
gggccgattcgcatccttgtcatgccgattcgctcgttgattcagccggtggtccaaggc
cttggcgacgtcgaaccactcgtattcacggtaggggaggatctaccgcttgacgaggca
gccaaacgactcatcgaaaacgcctacacgcgcgtggaactggtcatggatcgcggcgaa
ttcgccgtgcgtggtggcattctcgacgtgttcccacctaccgcgccgcacccggtgcgt
atcgaattcttcggtgacgaaatcgacactatcaaggaattccacgcttccgaccagcgc
acctatggcgagggtctcaaaaccatctgggccaccgcttgccgcgaactgcaattgact
gatgccgtgcgcacccgtgccaaggccctgatcggttcgattcccaacgccgaagacatg
ctcgagtccatcgccaacgccattccggtcgaaggtatggaatctctgatgcccgcgctt
gtggatcacttggaaccggtgggctccatgctgcccaagcatgctgtggtgctgcttagc
gaccctgaaaaactacgccgttccgctgaagatctggccaaaaccgccaacgagttcctg
gccgccagctggcatgtggccgcatccggccacggcgccggcgcgcccatcagcttcgac
gaagccagtttccttgactatgcggaaaccatcagttcgctcgagtattccgagcacccg
gtgattcgcctgacgagtttcggtgtagacaccacgctggccggccatgtgcagctcgac
gcgcaaaacccagccgaattccgcggcgatgaagccaaggcctcacaaggaatcgacggc
ctgttggatgctggcttccacgtcaccattaccgctgctgccgccggtaccttggctcgt
ctgaagcgtgcgctcaacaccaccggcatcaccacgttcgataccatccggtctcaggct
atcgatggattcgtggacaatgccgccaaaatcgccctgctcaccgaacgcgacctgacc
ggtcgaagctctgcggttgctgtggccaaaacgccgaaacgccggcgcaaggccatcgac
ctagtggaactcaaaaaaggcgattacgtggtgcatgagcagcacggcatcggccggttc
atcgaaatgcgccagcgcaccatcggcaccggcgccaacaaaaccacccgcgaatacctg
gtcatcgaatacgcgccttccaagcgcggtgcaccggcggacaaactgttcatccccacc
gaccagctcgaccaggtcagcaaatacatcggtgccgaagcccccaagctcaacaaactc
ggcggctccgactgggcggccaccaaggccaaggcccgcaagcacgtccatgagatcgcc
gacgacctaatcaagctgtactccgcccgccagcgcgccaaaggctttgcattcagccca
gacaccccgtggcagaaagaactggaagacgccttcccctatcaggaaaccgccgaccag
ctcaccactattgacgaagtcaagtccgacatggaaaagcccgtgcccatggaccgtctt
atctgcggtgatgtgggcttcggcaaaaccgaaatcgccgtacgtgccgcattcaaagcc
gtacaggacggcaagcaggtggcggtgctcgtgcccaccactttgctcgttcaacagcat
caggaaaccttcaccgaccgctttgaaggattcccggtgaatgtggccgccatgagccgc
ttccaaaccaccaaggagatcaacgcgaccatcgaaggcctggaaaacggcacggtggac
gtggtcatcggcacacacaaactgctgaacccgaaaatcaagttcaaggatttgggactc
gtcatcatcgacgaggagcagcgtttcggcgtggaacacaaggaaacgctgaaagccctg
cgcaccaacgtggacgtgctatccctgtccgccacgcctattccgcgtacgttggaaatg
gccgtgaccggcattcgtgagatgtccacgctcgccacaccgcccgaagaccgcctgccg
gtgctgacctatgtgggtgcctacgaggacgcgcaggtcaccgcggccgtacgccgggaa
ctgctgcgcggcggccaggtgttctatgtgcacaaccgcgtgcaggacatctcgtccatc
gctgacaagattcacacgctggtgcccgagtcgcgcgtcggcatcgcccacggcaagatg
ggggagaagcagctcgaccagattatccgcgacttctggcatcgcgacatcgatgtgctc
gtatgcaccacgatcatcgaaaccggtcttgatatctccaatgcgaacacgctgatcgtg
gaccatgccgaccgtttcggtctgagccagcttcatcagttgcgtggccgcgttggtcgt
ggccgcgagcgtgcgtacgcctacttcctgtatgacccgtccaagccgatgaccgagcag
tcgcacgaccgactcgccaccattgcgcagaacacggcgctcggctccggcttcgacgtg
gccatgaaggatttggaactgcgtggcaccggcaacctgctgggtgacgagcagtccggc
catatcgagggcgtcggcttcgacctgtatgtgcgcatggtctccgaagccgttgaaaaa
tacaaggaacccgatgaggacgtcgagccggtgtccgtgtccatcgatctgcctatcgag
gcgtcgattccgattgactacatcgattccgacaagctgcgtttggaggcataccgcaag
ctcgcttccgcacgcaatgaagccgacctcaaggatttgaaagaagaactcaccgaccgt
tacggcaagcctccggtcgaattcgaaaccctcttcgacgtggctcgcttgaagttcaag
gcgcgcaagctcggcatttcggagattctggcgcaatccaaccgcgtgcgtatcggacgc
attgacccgcccgaatccattcagatgcgcatgacgagaatctacaagggcacccaatac
cgcccggtcactcaccagctcatcgtccccaccccgttcaccggctccctgggccaaggt
cccatgagttccgatcaagtagttctttggaccaatcagctcctcgatgacttggcatgg
aggccacaacgatga
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